KEGG   Mastomys coucha (southern multimammate mouse): 116087309
Entry
116087309         CDS       T07224                                 
Symbol
Seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013  Nucleocytoplasmic transport
mcoc04150  mTOR signaling pathway
mcoc05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    116087309 (Seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    116087309 (Seh1l)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    116087309 (Seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcoc03019]
    116087309 (Seh1l)
   04131 Membrane trafficking [BR:mcoc04131]
    116087309 (Seh1l)
Messenger RNA biogenesis [BR:mcoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     116087309 (Seh1l)
Membrane trafficking [BR:mcoc04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    116087309 (Seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 116087309
NCBI-ProteinID: XP_031221811
LinkDB
Position
Unknown
AA seq 420 aa
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLCCSCISWNPSSSRAHPP
MIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTVTDPVHDTAFAPNLGRSFHILAV
ATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGSSQLGNSNPSLSSNIPNLQNSLNGTSAGRYFF
PPLDSPRAGSRWSSCAQLLPPPAPLLEHSCDADTANLQYPHPRRGYLSRPLNPLPENEGV
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggatcacaaggacctcatccacgatgtgtctttc
gacttccacgggcgccggatggccacctgctccagcgatcagagcgtcaaggtgtgggat
aagagtgagagcggagattggcattgtacagctagttggaagacacatagtggatctgta
tggcgtgtgacgtgggctcatcctgaatttggacaagttttggcttcctgttcttttgac
cgaacagcagctgtatgggaagaaatagtaggagaatcaaatgataaacttcgaggacag
agtcactgggtgaagaggaccactctcgtggacagcaggacatctgttactgatgtgaaa
tttgctcccaagcatatgggtctgatgttagcaacctgttccgcagatggtatagtaaga
atatatgaggctccagatgttatgaatctcagccagtggtctctacagcatgagatctca
tgtaagctgtgctgcagttgtatttcttggaacccttccagctctcgtgctcatcccccc
atgatcgctgtgggaagtgatgacagcagtccaaattcaatggccaaggttcagattttt
gaatacaatgaaaataccaggaaatatgcaaaagcagagactcttatgacagtcacggat
cctgttcatgatactgcgtttgctccaaatttgggaagatctttccatatcctggcagta
gcaaccaaagatgtaagaattttcacattgaaacctgtgaggaaagaacttacttcttct
ggtggcccaacaaaatttgaaatccacattgtggctcagtttgacaatcataattctcag
gtctggagggtgagttggaacataacaggaacagtcctggcgtcttcaggagatgacggc
tgtgttcggttgtggaaagctaattacatggacaattggaagtgtactggtattttgaaa
ggtaacgggagcccagtaaatgggagttctcagctgggaaactcaaatccttcactgagc
tcaaatattccaaatcttcaaaattcattaaatggaacttctgctggcaggtatttcttt
ccccctctggattccccacgggctggatcaagatggtccagctgtgcccagctccttcct
cctcctgctcctctgctagagcactcttgcgatgctgacactgccaacctccaatatcct
caccctcgcagaggatacctctctcggcctcttaatcccttacctgagaatgaaggggtg
taa

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