Mastomys coucha (southern multimammate mouse): 116087820
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Entry
116087820 CDS
T07224
Name
(RefSeq) protocadherin beta-13-like
KO
K16494
protocadherin beta
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mcoc04515
]
116087820
Cell adhesion molecules [BR:
mcoc04515
]
Cadherins
Protocadherins
116087820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
REJ
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
116087820
NCBI-ProteinID:
XP_031222233
LinkDB
All DBs
Position
Unknown
AA seq
1593 aa
AA seq
DB search
METKLEQAVQKRQVLFLCVFLGASWASAEQLQYSVAEETERGTFLANLAKDLGLGLGELS
AREARIVSDQNTRFLLFSPLTGELILNEKLDREELCGPTESCVLPFQLLLEKPFQIYRAA
LNVKDINDNSPVFLDKEIPLKISESTTPGATFLLERAQDSDVGTNSLSNYTISPNDYFHI
HVHDGGEGTIFPELVLDKMLDREEIPEFTLTLTALDGGSPPRSGTALVQILVLDINDNSP
QFVQSLYKVQSPENTPVGSLVVAVSARDLDTGSYGQIAYTFFYATERILQTFQINSTSGE
LYLKRELNYEAIQTYSITIQARDGGGLSGKCTVVVEVMDVNDNPPEFLLSSLNSPIPENS
PETVVAVFRIRDRDSGNNGKTMCSIANDLPFVLKPSVENFYTLVTEKPLDRESNTEYNIT
ISVTDLGTPRLTTQHIITVHVSDINDNAPAFAQTSYTMFVRENNSPALHIGTISATDSDS
GSNAHITYSLLPPQDHQLVLNSLISINADNGQLFALRALDYEALQTFEFHVGATDGGSPA
LSSQVLVRVVVLDDNDNEPFVLYPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNA
WLSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDALKHKLLLLVKDNGEPPRSASVTLHV
LLVDGFSQPFLTLPEVAHDPAQEDDELTLYLVIALASVSSLFLVSVLLFVGVRLCRRARA
ASPGVCFVPEEHFPGHLVDVSGAGTLSQNYQYEVCLAGGSGITSEFKFLSPIAPNFLTES
TGREDAVPPRTMEASRKLICSQRQVLFSFLLLGFSLTTAGELRRYSVVEEKEGRSFVTNL
VKDLGLGQLELSRRGAKVISKGNKLHFQLDQETGDLLLNEKVDREELCGHTEPCLLSFQV
LLDNPLDIFQAELEVTDINDHSPEFLDKEIMLKISESSLPGATFPLKNAQDMDVGQNGID
NYLVSSNSYFHVLTQKRSDGKKYPELVLDRALDREEEAEIRLTLTAQDGGSPPRSGATEV
HIEVLDINDNAPQFEQLFYRVQIPEDSPIGFLIVTVSATDKDIGVNGEISYSLFQVSDDI
SKTFSIHPLTGEVRLKEHLDFEKTQSYEFNIEARDAGTFSGKCTILIQVMDVNDHAPEII
LSAFTNSILENLPETMVAVFSVSDLDSGENGKISCSIQDDLPFFLKPSGENFYTLLSQKP
LDRETTAEYNITITVADMGSPILKTQVNLTVQVSDINDNAPIFTQTSYTMFVRENNSPAL
HIGTISATDSDSGSNAHITYSLLLPHDHQLALNSLISINADNGQLFALRALDYEALQAFE
FHVGATDQGSPALSSQALVHVVVLDDNDNKPFVLYPMQNASAPYTELLPRAAEPGYLVTK
VVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTTRLLSERDAPKHRLLLLVKDNG
EPPRSASVTLQVLVVDGFSQPYLPLPEVARDSEHEDSELTLYLVIALATVSSLFLVSVLL
FVGLRLCRRGREVSLGGCSVPEGHFPGHLVDVSGAGTLSQSYQYEVCLTGDSGTGEFKYL
KPILANFQDHSLRPEMGENPNSRNDWGFGIQLK
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaaattggagcaagccgtgcagaaaaggcaagtactgtttctttgtgtattt
ctgggagcgtcttgggctagcgccgaacagcttcagtattctgtggcagaggaaaccgag
agaggcacttttctagccaatctagcaaaggatttggggttggggctgggggaactgtca
gcccgggaagctagaattgtttcagatcagaacacacggtttttactgttcagtccgctg
actggagaattaattctaaatgagaagctggaccgagaggaactgtgcggccccacagaa
tcctgtgtgctgcccttccagttgctgttggaaaaaccatttcagatatatcgtgctgca
ttaaatgtcaaagacataaatgataattctccagtatttctagacaaagaaatacccttg
aaaatatcagaaagtaccactccaggggcgacgtttctcttggagagggcacaggattcc
gatgtgggaacgaacagcctgagtaactacaccatcagccccaatgattatttccacatt
cacgttcatgacggaggggaagggactatatttcctgagctggtactggataaaatgctg
gaccgggaagaaataccagaattcactttaactctcacagccttagatggtggctctcca
cccagatctgggacagccttggtgcaaattttggtgttggacataaatgacaactcccct
caattcgtgcagtcactttacaaagttcagtcacctgaaaacacccctgttggctccttg
gttgtcgctgtgtctgccagggacttagacacaggaagttacggacaaatagcctacaca
tttttttatgccactgaaagaattctccaaacgtttcaaatcaattctacatctggcgaa
ctttatcttaaacgcgaactcaactatgaagcaattcaaacttactcgataactattcag
gccagagatggtggtgggctttcggggaagtgtactgtggttgtagaggtaatggacgtg
aatgataacccacctgagtttctcttgtcctcacttaatagcccaattcccgaaaattca
ccagagacagttgttgctgtttttagaattagagacagagattcagggaacaatgggaaa
accatgtgctccattgcaaatgatctccctttcgtcctgaagccatctgtggaaaatttc
tatactctagtgacagagaagcctttagatagagaatcaaacactgaatacaacatcaca
atatcggtcaccgacctgggcacacccaggctcacaacccagcacattataacagtgcat
gtctctgacatcaacgacaatgcccccgccttcgcccaaacctcctacaccatgttcgtc
cgcgagaacaacagtcccgccctgcacataggcaccatcagtgccacagactcagactca
ggctccaatgcccacatcacctactcgctgctgccaccccaggaccaccagctggtcctc
aactcgctcatctccatcaacgctgacaatggacagctgttcgcgctcagggcactggac
tacgaggccctgcagaccttcgagttccacgtgggcgccacagatggaggctcaccagcg
ctcagcagccaggttctggtgcgcgtggtggtgctggatgacaatgacaatgagcccttc
gtgctctacccaatgcagaacgcctctgctccctgcacagagctgctgcccagggcagca
gagccgggatacctggtcaccaaggtggtggcagtggaccgcgattctggccagaatgcc
tggctgtcatttcagttgcttaaggccacggagcccgggttgtttagcgtgtgggcacac
aatggcgaggtgcgcaccaccaggctgctgagcgaacgtgatgcgctcaagcacaagctg
ctgctgctggtcaaggacaatggagagcctccgcgctctgccagtgtcacattgcacgtg
ttgctggtcgatggcttctctcagcccttcctgactctgccagaggtggcgcacgacccg
gcacaagaagatgatgagctaacactgtacctggtcattgccttggcgtctgtgtcttct
ctcttcctggtgtctgtgctgctgttcgttggagtgagactctgcaggagggccagggcg
gcctctccaggcgtctgctttgtgcctgaggaacactttcctggccacctggtggatgtc
agcggtgcagggaccctgtcccagaactaccagtatgaggtgtgtctggctggaggatca
gggataaccagtgaatttaagttcctaagtccaattgcccctaacttcctaactgaaagc
acagggagagaagacgctgtaccaccaagaacaatggaggccagcaggaagctcatttgc
agtcaaaggcaagtccttttttcctttctcctattaggcttctctctaacgactgcaggg
gaactgaggcgctattctgtggtggaggaaaaggagggtagatcctttgtaaccaattta
gtaaaagacctaggtcttgggcagctggaactctccaggaggggagctaaggtcatttct
aaaggtaacaaactacattttcagctggatcaggagacaggggatttgttgttaaatgag
aaagtggacagggaagaactgtgtgggcacacagagccatgcttgctaagcttccaagtg
ttgctagacaatcccttggatatttttcaagctgagttagaagtcacagacataaatgac
cactctccagaattcctggacaaagaaatcatgctaaagatatcagaaagcagtcttcct
ggagctacatttcctctgaagaatgctcaggacatggatgtaggccaaaatggtattgac
aactatctggtcagttccaattcctattttcatgtgctcacacagaaacgcagtgatggc
aagaaatatcctgaactggtactagacagagcactggatagagaggaggaagccgagatc
aggttaaccctcacagcgcaggatggtggctctccacctaggtctggagccactgaagtc
cacattgaagtcctggacatcaatgataatgcccctcaatttgagcagcttttttacaga
gtgcaaatccctgaggatagtccgataggctttctgatcgtcactgtctctgcgacagac
aaggacattggagtcaacggagagatctcctattcacttttccaggtttcagatgatatt
agcaaaacattttcaatccaccccttgacaggggaagtgcgattgaaagaacaccttgat
tttgaaaagactcagtcctatgaattcaatattgaagcaagagacgctgggaccttttct
ggaaaatgcacgattctgatccaagtcatggacgtgaatgaccatgctccagagattatc
ctgtctgcatttaccaactccatccttgagaatttaccagaaactatggttgcagttttt
agcgtttctgatctagattcaggagaaaatgggaaaataagttgttccattcaggacgat
ctacccttcttcctaaagccttctggggaaaacttttatacgctattatcacaaaaacca
ctggacagagagactacagcagaatacaacatcaccattactgtcgcagacatggggagt
cccatcctgaaaacacaagtcaacttaacagtgcaggtctctgacatcaacgacaacgcc
cccatcttcacccaaacctcctataccatgttcgtccgcgagaacaatagccctgccctg
cacataggcaccatcagtgccacagactcagactcaggctccaatgcccacatcacctac
tcgctgctgctgccacacgaccaccagctggccctcaactctctcatctccatcaatgct
gacaatgggcagctgtttgcactcagggctttggactatgaggcactgcaggccttcgag
ttccatgttggcgccacagaccaaggctcacccgcgctcagcagccaagctctggtgcac
gtggtggtgctggacgacaatgacaataagcccttcgtgctctacccaatgcagaacgcc
tctgctccctacactgagctgttgcccagggcagcagagcccggatacttggtcaccaag
gtggtggctgtggaccgcgattctggtcagaatgcctggctgtcattccagctgctcaag
gctacggagccagggctgttcaccgtgtgggctcacaatggcgaggtacgcaccactaga
ctgctgagcgaacgtgatgcacccaagcacaggctattgcttctggtcaaggacaatgga
gagcctccacgctctgccagtgtcacattacaggtgctggtggtggatggcttctctcag
ccctacctgcctttgccagaggtggcgcgcgattctgagcatgaggacagtgagctcaca
ttgtacctggtcatagccttggctactgtatcttctctcttcctggtgtctgtgctgctg
tttgtggggttgaggctgtgcaggaggggcagggaggtctctctgggtggctgctctgtg
cccgagggacactttcctggccacctggtagatgtcagtggcgcggggaccctgtctcag
agctaccaatatgaggtgtgtcttaccggagactctgggactggtgagttcaaatatctg
aaaccaattttagctaattttcaagaccattctcttagaccagaaatgggagaaaatccc
aactctaggaatgactggggttttggtattcagttaaaataa
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integrated database retrieval system
