Mastomys coucha (southern multimammate mouse): 116088140
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Entry
116088140 CDS
T07224
Symbol
Rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04140
Autophagy - animal
mcoc04211
Longevity regulating pathway
mcoc05010
Alzheimer disease
mcoc05014
Amyotrophic lateral sclerosis
mcoc05016
Huntington disease
mcoc05017
Spinocerebellar ataxia
mcoc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116088140 (Rb1cc1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
116088140 (Rb1cc1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
116088140 (Rb1cc1)
05014 Amyotrophic lateral sclerosis
116088140 (Rb1cc1)
05016 Huntington disease
116088140 (Rb1cc1)
05017 Spinocerebellar ataxia
116088140 (Rb1cc1)
05022 Pathways of neurodegeneration - multiple diseases
116088140 (Rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mcoc01009
]
116088140 (Rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcoc04131
]
116088140 (Rb1cc1)
03029 Mitochondrial biogenesis [BR:
mcoc03029
]
116088140 (Rb1cc1)
Protein phosphatases and associated proteins [BR:
mcoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116088140 (Rb1cc1)
Membrane trafficking [BR:
mcoc04131
]
Autophagy
Autophagosome formation proteins
ULK complex
116088140 (Rb1cc1)
Mitochondrial biogenesis [BR:
mcoc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116088140 (Rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
116088140
NCBI-ProteinID:
XP_031222628
LinkDB
All DBs
Position
Unknown
AA seq
1588 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCDRAPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFETIYSDYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLNEHEGSEKAEMKRSTEL
VLCPDMPRTTNTSLLTSFHKSMEHVAPDPTDAERGKELRESCQSTVQQEEASVDAKDSDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFMLECHQTIAKLDNQNMKA
IKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVRIVETLSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKL
FRKSFLRNRLFKGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHVLALHSLVKAAQSVDEMSQTITDLLSEQKASTGQASPHSAASPRIESTTA
ITTTTSPKTPPPLTVQDTLCPAVCPLEELSPDSIDAHTFDFETISHPNTEQTVHQASIDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTS
TRGNEGFGDRAALHVQLEKCRVAAQDSHISIQTIKDDLCYFRTFVQKEQCDLSNYLKCTA
VEIRNIIEKVKCSLEITLKEKHQQELQSLKIEYECKLDALAKDSEENVNKILKLKEDLVS
LEGALQNKDNEFTLIKHEKDAIVCMQQEKDQKLLEMENIMHTQNCEIKELKQSREVVLED
LKKLHDEKIESLRAEFQSLEQNHLKELEDTLHIRHTQEFEKVMTDHNMSLENLRKENQQR
IDEMLESHASTIQEKEQQLQEFKLKVSDLSDMRCKLEVELALKEAETDEIKILLEESRTQ
QKEVLKSLLEQETENLRTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRH
EEESNILKAELDNVMSLHHQAFEIEKKLKEQIVELQTKLKSELSALEKQKDEKITQQEEK
YEALIQNLEKDKERLVMNHEQDKEQLIQKLNFEKDKAVQTALDEFKLERELVEKELLEKV
KHLETQIAKSPAFESAREDSSSLIAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRSSL
IAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKK
LEEEVSKLRTSSFLPSAPVVTAPELYGACAPELPGEPERSVMETADEGRVDSAMETSMMS
VQENMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSLSSVSSRHSEKIAIRDFQVGDL
VLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVMEKEYCQ
AKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtgtttctggttaacactggaaccacgctgacatttgacactgagcta
actgtgcaaactgtggctgatcttaagcatgctattcaaagcaaatacaagattgctatt
cagcaccaggtgctagtggtcaatggaggagaatgcatggctgcagatagaagagtgtgt
acttacagcgctgggacggacacaaatccaattttcctttttaataaagaaatgatctta
tgtgaccgtgcacctgctattcctaaaactaccttttcaacagaaaatgacatggaaata
aaagttgaagagtctcttatgatgcctgcagtttttcacactgttgcttcaaggacacag
cttgcagtggaaatgtatgaagtcgccaagaagctttgctctttctgtgaaggacttgtc
catgatgagcatcttcagcaccaaggctgggctgcaatcatggccaatctggaggactgt
tcaaattcataccaaaaacttcttttcaagtttgaaactatttattcggattatcttcaa
tccatagaagacatcaagctaaaacttactcatttaggaactgcggtttcagtaatggcc
aagattccactgttggagtgcctaaccagacatagttacagggaatgtttgggaagactg
gattctttaaatgaacatgaaggctcagagaaagctgagatgaaaagatctactgaactg
gtgctctgtcctgatatgcctagaacaactaacacatccttgttaacctcatttcacaag
tcaatggagcatgtagctccagatcccaccgatgctgaacgtggcaaagaacttagggaa
tcttgtcaaagtactgtccagcaagaagaagcttcagtagatgctaaagacagtgatctg
cctttttttaatgtttctttgttagactggattaatgttcaagatagacctaatgatgtg
gaatctctggtcaggaagtgctttgattctatgagcaggcttgacccaaagattattcaa
ccgtttatgttagaatgccatcaaactattgccaaacttgataatcagaatatgaaagcc
attaaagggcttgaagatcggctgtatgccttggaccagatgattgctagctgtagccgg
ctggtaaatgaacagaaggagcttgctcagggatttttagctaatcagatgagagctgaa
aacttgaaggatgcatctgtgttgcctgatctgtgcctgagtcatgcaaatcagctaatg
attatgttgcaaaaccacagaaaactgttggatattaaacagaagtgtaccactgccaaa
caagagctagcaaacaatctccatgtcagactgaagtggtgttgttttgtgatgcttcat
gctgatcaagatggagaaaaactacaagcactgctccgccttgtaatagagctgttagaa
agagtcaggattgttgagactcttagcacagtccctcagatgtattgcctagctgttgtt
gaggttgtaaggagaaaaatgttcattaaacactacagagagtgggctggtgctttagtc
aaagatggaaaacaattatatgaagctgaaaagtcaaaaagggaatcctttgggaaatta
tttaggaagtcctttttaagaaatcgtctgtttaagggactggactcctggccttcctca
ttttgtactcagaagcctcgaaaatttgactgtgaacttccagatatatcattaaaagat
ttacagtttcttcaatcattttgtccttcagaagtgcagccattcctcagggttccctta
ctttgtgactttgaacctctgcaccagcatgtacttgccctgcacagtttggtgaaagca
gcacaaagtgtggatgagatgtcacagaccattacagacctactgagtgaacaaaaggcg
tccacaggccaggcatccccacactcagctgcttctccaagaatagaaagtacaacggcc
attacaactactacctcaccaaaaactccccctccactaactgttcaggataccttatgt
ccggcagtgtgtcccttagaagaattatctccagatagcattgatgctcatacttttgat
tttgaaaccatctcccatccaaacacagaacaaactgttcaccaagcttctatagacttg
gattcattagcagaaagccctgaatctgactttatgtctgctgtgaatgagtttgtgata
gaagaaaatttatcatctccaaaccctataagtgatccacaaagtccagaaatgatggtg
gagtcactttactcttcagtcatcaatgcaatagatagtaggcgcatgcaagacacaagt
acgcgtggaaacgagggctttggggatcgggctgctctacatgtccagctggagaaatgc
agagttgctgcccaagactctcacattagtatacaaaccatcaaggatgatctgtgctac
tttagaacatttgtacaaaaagaacagtgtgacttatcaaattatttaaaatgtacagct
gtagaaataagaaatattattgaaaaagtaaaatgttccctagaaataacactaaaggaa
aagcaccagcaagaactccaatctttaaaaattgagtatgaatgcaaacttgatgcgcta
gcaaaagacagtgaagaaaatgtaaataaaattttaaaattgaaagaagatttagtatcc
ctggaaggggctttacaaaataaagacaatgaattcactttgattaaacatgaaaaggat
gcgattgtctgcatgcagcaagaaaaggatcagaagttgttggagatggaaaatataatg
catactcaaaattgtgaaattaaagaactgaaacagtcacgagaggtggtgttagaagat
ctgaaaaagctgcatgatgaaaaaatagagtcattgagagctgaatttcagagtttagaa
caaaatcacctgaaggaattagaggacacactgcacatcaggcacacacaggagtttgag
aaagttatgacagaccacaacatgtctttggagaatttaagaaaggaaaatcagcaaaga
attgacgagatgctagaatctcatgcctcaactattcaggaaaaagagcagcagctgcag
gaatttaaactcaaagtttctgacttgtcagatatgagatgtaagttagaggttgaactt
gcactaaaggaagcagaaacagatgagataaagatcttgttggaagagagcagaacacag
cagaaggaagtgttgaagtctttacttgaacaagagactgaaaatttaagaacagaaata
agtaaactaaaccaaaaaattcatgataataatgagagttatcaggtgggtttgtcagag
ttaagagctttaatgacaattgaaaaagatcagtgcatttcagagttaatcagtagacac
gaagaagaatctaatatacttaaggctgaattagacaatgttatgtctttgcatcaccaa
gcatttgaaatagaaaaaaaactgaaagaacaaatagttgaattgcagactaaattgaag
tcagaactgagtgctcttgaaaaacaaaaagatgaaaaaataacccaacaagaagagaag
tatgaagcacttatccagaaccttgagaaagacaaggagagattggtcatgaaccacgag
caagacaaagaacaattaattcagaagcttaattttgaaaaagataaagctgttcaaact
gcactagatgaatttaagttggaaagagaacttgttgagaaagagttattagaaaaagtt
aaacatcttgagactcaaatagccaaaagtcctgcctttgagtcagccagagaagattct
tcaagcttaattgctgaacttcaagagaaacttcaagaagaaaaagctaagtttctggaa
caacttgaagaacaagagaaaagaaagaatgaagaaatgcaaaatgtcagaagctctttg
attgctgagcagcagaccaactttaacacagtcttaacaagagagaaaatgaggaaggaa
aacatcataaatgatcttagtgataagctaaaaagtacgatgcagcagcaagagcgggat
aaagatttgatagagtcgctttctgaggaccgagctcgtttgcttgaagagaagaagaag
cttgaagaggaagtgagtaaactacgcactagcagttttcttccctcagcacctgtggtt
acagccccagagctgtatggtgcttgtgcacctgagctcccaggtgagccagagagatca
gtcatggagacagcagatgaaggaagagtggattcagcaatggagacaagcatgatgtct
gtccaagaaaatatgctatctgaagagaaacaaaggatcatgctcctagaacggacattg
cagttgaaagaagaagaaaacaagcggttaaatcaaagactgatgtcacagagtttgtcc
tcagtatcttcaaggcattctgaaaaaatagccattagagattttcaggtgggagatttg
gttctcatcatcctagatgagcggcatgacaattatgtgttgtttactgttagtcctact
ttatattttctgcattcagagtctcttcctgcactggatctcaaaccaggtgagggagct
tcaggtgcatctagaagaccctgggtccttgggaaagtaatggaaaaggaatactgtcaa
gccaaaaaggcacaaaacagatttaaagttcctttagggacaaagttttacagagtgaaa
gctgtgtcatggaataagaaagtatag
DBGET
integrated database retrieval system
