Mastomys coucha (southern multimammate mouse): 116088389
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Entry
116088389 CDS
T07224
Symbol
Pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116088389 (Pms1)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
116088389 (Pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
HMG_WDHD1
CCDC71L
Motif
Other DBs
NCBI-GeneID:
116088389
NCBI-ProteinID:
XP_031223256
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MKQLPAATVRLLSSSQTITSVASVVKELVENSLDAGATSIDVKLENYGFDKIEIRDNGEG
IKAVDVPVMAVKYYTSKISSHEDLESLTTYGFRGEALGSICNVAEVVVTTRTAADDFSTQ
YVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYG
VLKPDIRIILVHNKAVIWQKSRVPDHRTALMSVLGTAVMGNMESVEQHCEESQIYLSGFF
PKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRRYYNLKCLRESTRLYPIFFLKID
VPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESYENNRVNVSSANMVV
SQTAETDVLFNKMESSGNNYPNADTPAIHFQKDESRKNTDHHLNEQINIGDHCNGHFSGE
YSHINKDTLQNIPMNNLPSEANQSKHSESHSVGSVEHIQGEIGRSGTGGSGGDGREALPE
KALEICADDWSKGNVCNSMGENIEPVKILVPQKSLSCKVTSSHPSLEPENLSDGPCSRTS
NVIDNRSGQLTAYDLISNRAVKKPMSATALFIQDRRTQLLSENPRTGLEDATVQIKAQWE
TLSEEEKHKYEEKAKKDLERYNNQMKKAIEQETEVSLKDGRKKIRATNAWGLTQKHKVKD
SSKQPKLDELFQSQKEKRKSENIKIKEIPFSMENLKVNFKKQKEVDLEETDEMCLIHSLK
FPDTWLVTSRADVMLLNPYRVEEALLFKRLLENHKLLAEPLEKPIILTESLFNGSHYLEV
LHKMSTVEEKCSGSAYLCDPRLTANGFKIRLTPGVSSTENYLEIEGMAKCLPFYGIMDLK
EILNAIVNKNAKELYECRPRKVINYLEGEAVRLSRQLPMYLPREDVQDLIYRMKQQLGKE
IKGKCPYLRAIFLAQLILFSGTN
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagttgcctgcagcgacagttcgcctcctgtctagttctcagacaatcacttca
gtggccagtgttgtgaaagagctcgttgaaaactccttggatgccggagctaccagcatc
gatgttaaactggagaactatggatttgataaaattgagatccgggacaatggtgagggc
atcaaggctgtagatgtacccgtaatggcagtgaagtactacacctcgaagatcagcagt
catgaagaccttgagagtctgacaacttatggctttcgtggtgaagccttggggtcaata
tgtaatgttgcagaggtggtcgttacaacaaggacagctgctgatgactttagcactcag
tatgttttagatggcagtggacacatactttctcagaagccttcacatcttggtcaaggt
acaactgtaactgctctaaagttgtttaagaatctacctgtaagaaagcaattttactca
acagctaaaaagtgtaaagatgaactaaaaaacgtacaggatcttctcataagctacggt
gtcctgaaacctgacataaggattattcttgtacataataaggcagtgatttggcagaaa
agtagagttccagatcacaggaccgctctaatgtcggttctgggcactgctgtaatggga
aacatggaatctgttgagcagcactgtgaagaatctcagatttacctaagtggattcttt
ccaaagcatgatgcagaccacaattccacaagtctttcaaccccagagagaagtttcatc
tttattaatagtcgacctgtacaccaaaaagatatactaaagttaatccgacgctattat
aatctgaagtgcctaagggaatctacccgcttgtatcccattttctttctgaaaattgat
gttccatcagctgaggtggatataaatctaacaccagataaaagtcaagtgttattacag
aataaggaatctgttttaattgctcttgaaaatctcatgatgacctgttacggaccacta
cccactacagagtcttatgaaaataacagagtaaatgtttcctcagctaacatggttgtt
agtcagacagcagaaacagatgtgctttttaataaaatggaatcatctggaaataattat
ccaaatgctgatactccggctattcacttccaaaaggatgaatctagaaaaaacactgat
catcatttaaatgaacagataaatataggcgatcattgtaatggtcattttagtggtgaa
tattctcacattaataaggacacacttcagaatatccctatgaataatttaccatcagag
gctaatcagagtaagcacagtgagtctcattctgtaggttctgttgaacatatccaagga
gaaattggcaggagtggtacaggagggagtgggggagatgggagagaagcacttcctgag
aaagctctggaaatctgtgcagacgattggagcaaaggaaatgtgtgtaattcgatggga
gagaatatcgaacctgtgaaaattttagtgccacaaaagagcttatcatgtaaagtcacc
agtagtcacccaagccttgaaccagagaatctcagtgatggtccttgtagcagaacatca
aatgtaatcgataacagatctggacagcttacagcctatgacttaattagcaatcgagca
gtcaagaagcccatgtcagccactgccctgttcattcaagaccgccgcactcagctcctc
tcagagaaccccaggactggtttggaggatgcgacagtacaaattaaagcacaatgggag
accctgagtgaagaggaaaaacacaaatatgaggaaaaggctaaaaaagacttggaacga
tacaataaccaaatgaagaaagctattgaacaggagacagaagtgtcattaaaggacggc
aggaaaaagataagggctaccaatgcgtggggcttgacacaaaaacataaggtgaaagac
tcatctaaacagccaaaacttgatgagctctttcagtcccagaaggaaaagaggaagagt
gaaaatattaaaataaaagaaatccccttttctatggaaaacttaaaagtgaactttaag
aaacaaaaggaagttgacttagaggagacggatgagatgtgcctgatccacagcctcaag
tttcctgatacatggctggtcacatccagagcagatgtcatgttactgaacccgtacaga
gtggaggaagccctgctatttaaaagactgcttgagaatcataaactccttgcagaacca
ctggaaaagccaattattttaacagagagtctttttaatgggtctcattatttagaggtt
ttacataaaatgtcaacagttgaggaaaaatgcagtggatcagcttacctgtgtgacccc
cgtcttacagcaaatggcttcaagatcagattgacaccaggagtttccagtactgagaac
tacttggaaatagaaggaatggctaagtgtctcccattctatggaataatggatttaaag
gaaattcttaatgctatagtaaacaaaaatgcgaaggagctttatgaatgcagacctcga
aaagtgatcaattatctggagggagaagccgtccgtctatccagacagctacccatgtac
ttaccacgagaggatgtccaagatcttatctatagaatgaagcaacagctcggaaaagaa
attaaagggaagtgtccttaccttagagccatcttcctggcccagttaatcctcttcagt
gggacaaattga
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