Mastomys coucha (southern multimammate mouse): 116088432
Help
Entry
116088432 CDS
T07224
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116088432 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116088432 (Sf3b1)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116088432 (Sf3b1)
Spliceosome [BR:
mcoc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116088432 (Sf3b1)
Complex B
116088432 (Sf3b1)
Complex C
U2 SnRNP specific factors
116088432 (Sf3b1)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116088432 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
116088432
NCBI-ProteinID:
XP_031223373
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatatcgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattccacaggttattatgac
caagaaatttatggtggaagtgatagcagatttgctggatatgtaacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatccacgagcttgcttggtcagaag
aagcctggatatcatgcccccgtggcattgcttaatgatataccacagtcaactgaacag
tatgatccatttgctgagcatcgtcctccaaagattgcagaccgggaagatgaatacaaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacctacatggatgttatgcgagaacaacat
ttgactaaagaagagagagaaattaggcaacaactagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacgaaaacggcgctgg
gatcaaaccgctgaccagactcctggtgccactcccaaaaagctatcaagttgggatcag
gcagagactcctgggcataccccttctttaagatgggatgagacacccggtcgtgcaaaa
ggaagtgaaacacctggagcaaccccaggctcaaaaatatgggatcctacacctagtcat
acacctgcgggagctgctactcctggacgaggcgatacaccaggccatgcaacccccggc
catggtggtgcaacttccagtgctcgtaaaaacagatgggatgagacccccaagacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcggacagatcggggtgga
gactctattggtgaaacaccaactcctggagcaagtaaaagaaagtctcgttgggatgaa
acgccggctagccaaatgggtggaagtactcctgttctgactccaggaaaaacaccaatt
ggcacaccagctatgaacatggctactccaactccagggcacataatgagcatgactcct
gaacagcttcaggcttggcggtgggaaagagagattgatgagcgaaaccgcccactttct
gatgaagaattagatgctatgttcccagaaggctataaggtacttcctcctccagctggt
tatgttcctattcgaactccagctcgaaagctgacagcaactcccacacctttgggtggt
atgactggtttccacatgcaaactgaagacagaactatgaaaagtgtcaatgaccagcca
tctgggaatcttccatttttaaaacctgatgacattcagtactttgataaactattggtt
gatgtagatgagtcgacacttagtccagaagagcaaaaagaaagaaaaataatgaagttg
cttttaaaaattaagaatggtacacctccaatgagaaaggctgccttacgtcagattact
gataaagctcgagaatttggcgccggaccactgtttaaccagattcttcctttgttgatg
tcccctacacttgaggatcaagagcgacatttacttgtgaaagttattgatagaatattg
tataaacttgatgacttggtgcggccatatgtgcacaagattcttgtggttattgagcca
ctgttgattgatgaagattactatgctagagtggaaggccgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgaatatgtccgaaacacaacagctcgagcttttgctgttgtagcctctgccctgggc
attccgtctttattgcctttcttaaaagctgtgtgtaaaagcaagaagtcttggcaagcg
aggcacactggtattaagattgtacaacagatagccattctcatgggctgtgctatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtctcgtggatgagcagcagaaa
gttcggactatcagtgctctggccattgctgctttggctgaggcagcaactccttatggt
attgagtcttttgattctgtgctcaagcccctatggaagggtatccgccaacacagagga
aagggtctggctgctttcctgaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgttttgaaggtggtgaaacagtgttgtggaactgatggt
gtagaagcaaactacattaaaacagagattcttccacctttctttaaacacttctggcaa
cacagaatggctttggatagaagaaattaccgacagttggtcgacacaactgtggagttg
gcaaacaaagtaggtgcagcagagatcatatctaggattgttgatgatctgaaggatgaa
gctgagcagtacaggaaaatggtgatggaaacaattgagaaaattatgggcaatctgggt
gcagctgatattgaccataaacttgaggaacaactgattgatggtattctctatgctttc
caagaacagactacagaggattcggtaatgttgaatggctttggcacagttgttaatgct
cttggcaaacgagtcaaaccgtacttgcctcagatctgtggtacagttttatggcgttta
aataataaatcagcaaaagtgaggcagcaagcggcggacttgatttctcgcaccgctgtt
gtcatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgctgtatgaa
tatttgggtgaagagtaccctgaagtattgggcagcattcttggagcactgaaggcaatt
gtaaatgtaataggaatgcataagatgacaccaccaattaaagatctcctgcctagactc
acccccatcttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttgga
cgcattgctgacaggggagctgagtatgtatctgcaagagagtggatgaggatttgtttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgaagagctactgtcaataca
tttggttatatcgcaaaggctattggcccccacgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagggtttgtacgactgttgcaatagccattgttgct
gaaacgtgctcacccttcacagtactccctgccttaatgaatgagtacagagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactctccttcttgtttgagtatatcggtgaa
atgggaaaagactacatctatgctgtaacgcctttacttgaggatgcattgatggatagg
gaccttgtacacagacagacagctagtgcagtggtacaacacatgtcacttggtgtttat
ggatttggctgtgaggattctctgaatcatttactgaactacgtgtggcctaatgtgttt
gagacgtctccccatgtaatccaggcagtcatgggagctctagagggcctgagggttgct
attggaccatgcagaatgttgcagtattgcttacagggcctgtttcacccagctcggaaa
gtcagagatgtctattggaaaatttacaactccatctacattggctcccaggatgccctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
