Mastomys coucha (southern multimammate mouse): 116088649
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Entry
116088649 CDS
T07224
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04151
PI3K-Akt signaling pathway
mcoc04382
Cornified envelope formation
mcoc04510
Focal adhesion
mcoc04512
ECM-receptor interaction
mcoc04820
Cytoskeleton in muscle cells
mcoc04926
Relaxin signaling pathway
mcoc04933
AGE-RAGE signaling pathway in diabetic complications
mcoc04974
Protein digestion and absorption
mcoc05146
Amoebiasis
mcoc05165
Human papillomavirus infection
mcoc05200
Pathways in cancer
mcoc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
116088649 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116088649 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116088649 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116088649 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
116088649 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
116088649 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
116088649 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
116088649 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
116088649 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
116088649 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
116088649 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
116088649 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcoc04147
]
116088649 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
mcoc00536
]
116088649 (Col4a4)
Exosome [BR:
mcoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116088649 (Col4a4)
Glycosaminoglycan binding proteins [BR:
mcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116088649 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116088649
NCBI-ProteinID:
XP_031224030
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MRCFFRWTGPFITTPWSLIFILFIIQCEYGGGKKYSSPCGGRNCSVCQCFPEKGSRGYPG
PLGPQGPIGPLGHPGPIGIPGEKGQRGASGLPGPPGEKGDKGPTGVPGFPGVDGVPGHPG
PPGPRGKPGMDGYNGSRGDPGCPGERGAPGPGGPPGQPGEKGEKGRSVFISGGFKGIQGD
HGDPGPPGLPGPRGAQGSTGPMGHAGAPGLAGPIGPPGSPGSKGNPAMGIKGQMGDPGEV
GQHGPPGPTLLVQPPDLSIYRGEKGVRGIPGMIGPPGPPGLKGEPGVGIKGEKGIPGFPG
PRGEPGSHGSPGFPGFKGIQGMAGDPGLFGLPGPKGDPGDRGYPGPPGILVTPAPPLKGA
QGDPGPPGRYGEIGDVGLPGPPGPPGRPGETCPGMMGPPGPPGVPGPPGFPGEAGVPGRF
DCAPGKPGKPGLPGLPGAPGPEGPPGSDVIYCRPGCPGPMGEKGKMGPPGRKGAKGAKGN
EGLCTCPPGPMGPPGPPGPPGRQGSKGDLGLPGWQGEKGDPGQPGAEGPPGPPGRPGTMG
PPGHKGAKGDMVISRVKGQKGERGLDGPPGFQGPHGQDGQDGRAGERGDPGPRGDHKDAA
PGERGLPGLPGPPGRTGPAGPPGLGFPGPPGQRGLPGEPGHPGMRGFDGRKGHKGDSIPC
NVTYPGKPGPPGFDGPPGLKGFPGPPGAPGMRCPDGQKGQRGKLGMSGIPGPPGFRGDMG
DPGIKGEKGTSPIGPPGPPGSPGMDGPKGIPGDSAFGDPGPPGERGLPGAPGMKGQKGFP
GCPGAGGPPGIPGFPGLKGPKGREGSPGFPGIPGSPGHSCERGAPGIPGQPGLPGTPGDP
GAPGWKGQPGDMGPSGPAGMKGLPGLPGLPGADGLRGPPGVPGPTGEDGPPGFPGLKGPS
GLPGFPGFPGERGKSGPDGEPGRKGEVGEKGWPGLQGDLGEPGAKGDRGLPGDAGEAAIS
KKGEPGDVGPPGDGGFSGERGDKGSPGMQGGRGDPGRDGPPGLHKGQPGINGLPGPPGPP
GPPGSPGLRGVIGFPGFPGDQGDPGSPGPPGFSGDDGARGPKGNKGEPAGQCGLPGPKGE
PGSPGYQGHTGAPGEKGFPGDEGPRGPPGRPGQPGSLGPPGCPGNPGMPGLKGHPGEVGD
PGPRGYAGELGRPGPAGLKGPPGSPGLNGLHGLKGEKGAKGTSGLLEMGPPGPMGMPGQK
GEKGDPGGPGISPPGLPGEKGLPGPPGRPGPPGPPGAPGRAAKGDIPDPGPPGDWGPPGP
DGPRGVPGPPGSPGNVDLLKGDPGDYGLPGPPGSRGPPGPPGCQGPPGCDGKDGQKGPMG
LPGFPGPPGLPGTPGEKGLPGPPGKKGPVGPPGCRGEPGPPADVDSCPRIPGLPGVPGPR
GPEGAMGDPGQRGLPGPGCKGQPGPDGRRGQDGIPGSPGPLGRKGDTGEAGCPGAPGPPG
PTGDPGPKGFGPGYLSGFLLVLHSQTDQEPACPVGMPRLWTGYSLLYMEGQEKAHNQDLG
LAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLSSAAPLPMMPLSEEEIRPYISRCAV
CEAPAQAVAVHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRA
APFLECQGRQGTCHFFANEYSFWLTTVNPDLQFASGPSPDTLKEVHAQRRKISRCQVCMK
HS
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgctttttcagatggaccgggcccttcatcacaaccccctggtcactaatattt
atcctctttattatacaatgtgaatatgggggcggcaagaaatacagcagcccctgtgga
ggaagaaactgctctgtctgccagtgttttcctgagaagggatctcggggttacccagga
ccactgggaccacagggaccaatagggcccttgggacatccagggcccattgggattcca
ggagaaaaaggacagagaggtgccagtggcctgcctggaccaccaggagagaaaggagat
aagggtccaactggtgtccctggatttccaggcgtggatggtgtacctggtcacccaggg
ccacctggacccagaggcaaacctggcatggatggctacaatggttcacgaggtgatccg
ggctgtcctggagaaagaggagctcctggcccaggcggcccccctggtcagcctggggaa
aaaggagaaaaaggaagatcggtgttcatttcaggtggcttcaaaggtattcagggagac
catggggacccaggaccacctggcttaccaggacctaggggtgcacaaggatcaactggg
cccatggggcatgcgggtgcaccagggctagcaggacccataggtcctcctgggagccct
gggtcgaagggaaatcctgccatgggaataaaagggcaaatgggagatccgggtgaagtt
ggccagcatggtccgcctgggcccactctgttggtacagccacctgatttgagtatctat
agaggagaaaagggtgtaagaggaattcctggaatgattggccctccaggacctccagga
ctcaagggagagcctggtgtcgggatcaaaggagaaaaaggtatccctgggttcccggga
cccaggggtgaacctggttcgcatggatctccaggttttccagggttcaaggggatccaa
ggaatggctggagatcctgggctgttcggacttcctggtccaaagggggatcctggagat
cgcgggtacccgggaccaccaggcattttggtgactccagctccaccactcaaaggagct
caaggggatccaggaccccctggccgctatggagagattggagatgttggactaccgggt
cctccagggcccccaggcagaccaggggaaacttgtccaggcatgatgggacctcctggg
ccaccaggggttcccggtcctccaggatttccgggggaagctggtgttcctggaagattc
gactgtgccccaggaaagcctgggaagccaggactacctggcctgcctggagcaccagga
ccagagggcccccctggatcagatgtgatatattgtcgccctgggtgccctggaccaatg
ggagagaagggaaaaatgggtcccccaggaagaaaaggagcaaaaggagcaaaaggaaat
gagggactctgtacctgtccacctggtcccatgggaccccctggccccccaggaccccca
ggaagacaaggaagtaaaggagacttagggcttcctggttggcagggagaaaagggtgat
ccaggccagcctggtgctgaaggacctccagggccaccaggaagacctggtaccatgggg
ccccctggtcacaaaggggcaaagggtgacatggtcatatcaagagtgaaagggcaaaaa
ggtgaaagaggactggatgggccaccaggatttcaggggccacatggacaagatggtcag
gatggacgtgctggagaaagaggggatcctgggccgcgaggagaccataaggacgcagcc
ccaggtgagagagggctccctggactgccaggccctccagggaggacaggacctgcgggg
cctccaggcctgggatttccaggcccaccaggacagagaggcctaccaggagagcccggg
cacccaggcatgagaggctttgatggcaggaaggggcacaaaggtgactccattccgtgt
aatgtaacctaccctggaaaaccaggtccgccaggatttgatggacctccaggtctgaag
gggtttccaggacccccgggggctcctggtatgagatgtccagatgggcagaaaggccaa
cgaggcaaactgggaatgtctggaattccaggtccacctggttttcgtggtgacatggga
gatccaggcatcaaaggtgaaaaggggacctcccctattggacccccaggcccacctggg
tctcctggaatggatggcccgaaaggaatcccaggagactctgcatttggtgacccagga
ccccctggagagaggggtcttccaggagcaccaggcatgaaaggacagaaaggtttccca
ggatgcccaggcgctggaggcccacctggcattcctggatttccaggactcaaaggtccc
aaaggcagagagggaagtcctggctttccagggatcccaggttcccctggccattcctgt
gaaagaggtgctccagggatcccaggacaaccaggacttcctggaactccgggtgaccca
ggggccccaggttggaaaggccagccaggagacatggggccctctggtccggctgggatg
aagggcctccctggtctcccaggcctaccaggagctgatggtctccgagggcctcctggg
gttccaggccccacaggggaagatggtccacctggttttccaggcctaaagggaccctca
gggctgcctggcttccctggttttccaggagagagaggaaagtcgggcccagatggagaa
cctggaagaaagggagaggttggagagaaaggctggcctggcttgcagggagacctggga
gagccaggcgccaaaggagacagaggacttcctggtgatgcaggagaagcagccatttcc
aaaaagggagaacctggggatgttgggcctccaggagatggtggattctcaggagaaaga
ggtgataaaggaagcccaggaatgcaagggggaagaggagatcctggaagagatggacca
cctggactccacaaagggcagcctgggataaatgggcttcctgggcctcctggcccccct
ggccctccaggatcacctggactgagaggagtcattggctttccaggatttccaggtgac
cagggtgatccaggctctccaggaccccctggattctcaggagatgatggagcaagagga
cctaaaggaaacaaaggcgaacctgccggtcagtgtggtctacctggtccaaagggtgag
ccaggtagccctggataccaaggacatactggagcccctggagagaaaggctttcctgga
gatgaaggaccccgaggaccaccaggcagacctggacagcctggctctttaggaccacca
gggtgtccaggtaacccagggatgcctggactcaagggccatccaggagaagtgggagac
cccgggccaagaggttatgccggagaattagggaggccaggtcctgctggactgaaaggg
cctcctgggtctccgggtctgaatggcttgcacggtctgaagggcgagaaaggagcaaaa
ggcacctcaggtttgcttgaaatgggtccacctgggccaatggggatgcctgggcaaaaa
ggagagaaaggtgaccctgggggcccagggatttctcccccaggacttcctggagaaaag
ggcctcccaggacccccagggagaccgggaccacctggtcctccaggtgccccaggaaga
gctgcaaaaggtgacatccctgatccaggtccacctggagactggggacctcctggcccc
gatggcccaagaggagtacctgggcctccaggttcccctgggaatgtcgatcttctgaaa
ggggatccaggtgactatggcttgccaggaccacctggctcccgaggcccaccaggccct
ccagggtgtcagggtcccccaggatgtgatggcaaagatggacagaaaggaccaatggga
cttccaggatttccagggccacctggtcttcctgggacacctggagagaagggattacct
ggccctccaggcaaaaaagggccagtgggtcctccaggctgcagaggtgaacctgggcct
cctgcagatgtggattcctgtcctcgaatcccaggacttcctggagtgccaggccccagg
ggaccagaaggagccatgggggaccctggacagagaggcctgcctggaccagggtgcaaa
ggacagcctggcccagatggcaggaggggccaggacggcatccctggatctcccggacct
cttggacgcaaaggtgacactggagaggcaggctgtcctggagcaccaggtcctcctggt
ccaactggtgatcctgggcccaaggggtttggccctggatacctcagtggcttcctcctg
gttctccacagtcagacagatcaagaaccagcctgccctgtgggcatgcctcggctttgg
acaggatacagcttgttatacatggaaggacaggagaaggcccacaatcaagatcttggt
ttggcaggatcttgccttcctgtgtttagcaccctgccctttgcctactgcaacatccac
caggtgtgccactacgctcagagaaatgacagatcctactggctgtccagtgcggctcct
cttcctatgatgccactctcagaggaagagatccgcccttacatcagccgctgtgcagtg
tgtgaggccccagcacaggcagtggctgtccacagtcaggaccaatccatcccaccgtgt
ccacggacatggaggagcctctggattgggtactcatttctgatgcacacaggagctggg
gaccaaggaggcgggcaggcgctgatgtcacctggcagctgcctagaggacttcagagct
gcaccattccttgaatgccagggcaggcagggaacctgtcacttctttgcaaacgagtac
agcttctggttgaccaccgtgaacccagacctacagtttgcctctggcccttcaccggac
accttgaaagaagttcacgcccagcgccggaaaatcagcaggtgccaggtctgcatgaag
cacagctaa
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integrated database retrieval system
