Mastomys coucha (southern multimammate mouse): 116089889
Help
Entry
116089889 CDS
T07224
Symbol
Col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04820
Cytoskeleton in muscle cells
mcoc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116089889 (Col5a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116089889 (Col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcoc00536
]
116089889 (Col5a1)
Glycosaminoglycan binding proteins [BR:
mcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116089889 (Col5a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
ConA_2nd_BAM2
Motif
Other DBs
NCBI-GeneID:
116089889
NCBI-ProteinID:
XP_031225367
LinkDB
All DBs
Position
Unknown
AA seq
1840 aa
AA seq
DB search
MDVHTRWKAARPGAPLLSSPLLLLLLLLWAPPPSRAAQPTDLLEMLDFHNLPSGVTKTTG
FCATRRSSSEPDVAYRVSKEAQLSMPTKQLYPESDFPEDFSILTTVKAKKGSQAFLVSVY
NEQGIQQLGLELGRSPVFLYEDHTGKPGPEEYPLFPGINLSDGKWHRIALSVYKKNVTLI
LDCKKKITKFLNRSDHPIIDVNGIIMFGSRILDDEIFEGDIQQLLFVSDHRAAYDYCEHY
SPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYEDPDDLGKEPAPTQKPVEAARE
TTEVPEEQTQPPPEAPTVPETSDTAGKEDSLGIGDYDYVPTDDYYTPSPYEDFGYGEGVE
NPDQPTNPDSGAEVPTSTTVTSNTSNPASSPGEGKDDLGGEFTEETIKNIEENYYDQYFD
PDSDSSVSPSEIGPGMPANQDTIFEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG
LPGPPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM
VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQG
PPGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGIPG
DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG
PPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQG
PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRG
EDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKG
GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG
FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG
PPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEG
PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVPGEKGPQGPAGRDGLQG
PVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG
EPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG
PSGAPGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEGGPLGPKGERGEKGEAGPSG
AAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG
PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDG
LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG
EKGDRGLPGPQGSSGPKGEQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG
HPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEEIFGSLNSL
KLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGS
TCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASA
HQNITYNCYQSVAWQDAATGSYDKALRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKT
VLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFLG
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggacgtacacacccgctggaaagctgcgcgcccgggcgccccgctgctgtcctcgccg
ctgctcctgctcctgctgctgctgtgggcgccgcctccgagccgcgcagctcagccaaca
gatcttctggagatgctagattttcataatttgccctcaggggtaacgaaaaccacaggt
ttctgtgccactcgacgatcttccagcgagccggatgttgcctaccgagtctctaaagaa
gcacaactcagcatgcccaccaaacagctgtaccctgagtctgattttcctgaggacttc
tccatcctgactaccgtgaaagccaagaagggcagccaggccttcctagtctccgtttac
aatgagcagggcatccagcagttggggctggagctgggccgctctcctgtcttcctctat
gaggaccacacagggaagcctggacctgaagagtatccactcttccctggtatcaacttg
tccgatggcaagtggcaccgaattgctctcagtgtctacaagaaaaatgtcaccttgatc
cttgactgtaaaaagaagattacgaagttcctcaaccgcagtgaccaccccataatagat
gtcaacggcatcatcatgtttggctcccggattctggatgatgaaatatttgagggtgac
atccaacagttgctcttcgtctccgaccacagagctgcctatgattactgtgagcactac
agccccgactgtgacactgcggtccctgacacacctcaatcacaggaccctaacccagat
gaatattacccagaaggagagggtgagacctattactatgagtatccatattatgaagac
cctgatgacctgggaaaggagcctgcccccacgcagaagccagtggaagctgccagagaa
accacggaggttcccgaggagcagacccagcccccacccgaagcccctacagtgcctgag
accagtgacacggctggcaaggaggacagtctagggattggggactatgactatgtgccc
actgacgactattatactccatccccatatgaagactttggctatggcgagggtgttgag
aaccctgaccagcccacgaaccctgactcaggggctgaggtccccaccagcaccaccgtt
acctccaacacctccaatccagcttcatctccaggggaagggaaggatgacctgggtggc
gagttcactgaggaaaccatcaagaatatagaggaaaattactatgaccagtactttgac
cctgactccgactccagtgtctctccatcagagatagggccaggcatgcctgctaaccag
gacaccatctttgaggggattggaggaccccgaggtgagaaagggcaaaagggagaacca
gccatcattgagccgggaatgctgatagaggggccccctggccctgaaggccctgctggt
cttccgggacctccaggaactacaggtcctactggccaaatgggagaccccggagaaagg
ggtccccctggacgcccaggtcttcctggagcagatggcttgcctggtcctccaggcacc
atgctcatgctgccattccggtttggaggtggtggtgatgccggttctaagggccccatg
gtctctgcccaggagtcccaggcccaggctatcctccagcaggccaggttggcactgagg
ggaccagctggtccaatgggtctcaccgggagacctggccccatgggtcctcctgggagc
ggaggtttgaagggtgagccaggagacatgggacctcagggtcctcgaggtgtgcaaggc
ccacccggcccaacagggaagcctggaagacggggccgtgctgggagcgatggagccaga
ggcatgccaggacaaacaggccccaagggtgaccgtggctttgatggtctggctgggttg
ccgggagagaaaggccatagaggtgaccctggtccttctggcccgccgggaatcccggga
gacgatggagaaaggggtgacgatggagaagttgggcccagggggctgcccggggagcct
ggaccacgtggtctgcttgggccaaaaggcccccctggccctcctggacctcctggtgtg
acgggtatggatggccagcctggccccaaaggaaatgtgggtcctcagggagagcctgga
cccccaggacagcagggtaatcctggtgctcagggtcttccgggtccccagggtgccatt
ggtcctccaggagaaaagggtcctctggggaaaccaggtctcccaggaatgccaggcgct
gatggacccccggggcaccctggcaaagaaggtcctccaggagagaaaggaggccagggt
cctcccggcccccagggtcccattggctacccgggtccacgaggagtcaagggggcagat
ggcatccgaggtctgaagggcaccaaaggggaaaagggtgaagatggcttccctgggttt
aaaggcgacatgggaattaagggtgaccggggggagatcggcccacctggtccccgagga
gaagatggtcctgaaggcccaaagggtcgaggtggtcccaatggcgatcctggtcccctg
gggcccactggggagaagggaaagcttggagtgcctggattaccaggatatccaggaaga
caagggccaaagggttctattggattccctggcttcccgggcgccaacggagagaagggc
ggcagggggacacctggaaagccaggaccacggggacagagaggcccaacgggtccgagg
ggtgaacgaggcccacggggcatcacagggaagcctggccctaagggcaactctggaggc
gatggcccagctggccctcctggtgagcggggacccaatggaccccaaggtcccaccggc
ttccccggacccaagggtcccccgggcccaccaggcaaggacgggcttcctggacaccct
gggcagagaggggagaccggtttccaaggcaagactggccctccagggcccccaggagtg
gttggccctcagggtcccacaggagaaacgggccccatgggtgagcgtggccaccctggc
cctccaggccctcctggtgaacagggcctcccaggtgctgctgggaaagaagggacgaag
ggtgatccgggtcctgctgggctccctgggaaggatggtcctccaggactacgtggattc
cctggggaccgagggctccctggccccgtgggagcccttggactgaaaggcagcgaaggc
ccccctggccccccaggccctgcgggttctccaggggagagaggaccagctggtgctgct
gggcccatcggaattccagggagacccggccctcagggacctccagggcctgctggagag
aaaggggttcctggtgaaaaaggtccacaaggcccagctggccgagatggcctccaaggt
cctgtggggctccctggaccagccggccctgtgggtcctcctggagaagatggagataag
ggagagatcggagaaccagggcagaagggaagcaagggcgacaaaggcgagcagggtcct
cctgggcctaccggtcctcaaggccccattggacagccaggcccttcaggagcagatggt
gaacctggccctcgtggacagcagggcctgtttgggcagaaaggagatgaaggttctaga
ggtttcccaggaccacctgggccagtgggattgcagggtttgccaggacctccaggagaa
aagggcgagacaggagacgtgggccagatgggccctcctggtccaccaggcccccgagga
ccctctggagctccaggtgctgatgggccacagggtcctcccggagggattggcaacccc
ggtgcagttggagaaaagggagagcctggtgaatctggagagcctggccttcctggagaa
ggaggtcctctgggacctaaaggagaaagaggggagaagggagaggctggcccctctggt
gctgctggaccccctggacctaaaggccctcctggagatgatggccccaaaggcagcccc
ggccccgtgggcttccctggagaccctggtccccctggagagccaggccctgcaggtcaa
gatggcccacctggtgacaaaggagatgatggtgaacctgggcagacgggatccccgggc
cctactggtgaacctggtccatctgggcctccaggaaagaggggtcccccgggccctgca
ggccctgaaggcaggcagggggagaaaggagccaagggagaagctggcttagaaggccct
cctgggaagactggccccattggcccccaaggggcccctgggaagcctggccctgatgga
cttcgtggcatccctggtcctgtgggtgagcaaggccttccaggatccccaggccctgat
ggtccacccggccccatgggtcctccaggactccctggcctcaaaggagactccggtccc
aaaggtgaaaagggtcatccaggtctgattggactcattggacctccaggcgagcaaggt
gaaaagggtgaccgaggactcccaggcccccagggttcatccggtcctaaaggagaacag
ggcatcacaggtccttctggtccacttgggcctcctggtccccctggcttgccgggccct
ccaggtcccaaaggtgctaaagggtcttcgggtcccaccggcccaaagggcgaagcaggc
cacccaggactccctggcccacccggtcctccgggtgaggtcatccagcccctgccaatc
caggcatccaggactcggcggaacattgatgccagccagctcctggatgatggggctggg
gagagctacgtggattatgcagatggcatggaagagatctttggttccctcaactccctg
aagttggagatcgagcagatgaagcggccactaggcacacagcagaacccagcccgtacc
tgcaaggatctacagctctgccatcctgacttcccagacggcgaatactgggtcgatccc
aaccaagggtgctccagggactccttcaaagtctactgcaatttcacagccggagggtcc
acgtgcgtcttccctgacaagaagtctgagggagccagaatcacttcttggcccaaagaa
aacccaggttcctggttcagtgaattcaagcgtgggaaactgctctcctatgtggatgct
gaaggcaaccctgtgggcgtggtacagatgaccttcctgcggctgctgagtgcctctgcc
caccagaacatcacctacaactgctaccagtccgtggcctggcaagatgccgccacaggc
agctacgataaggccctccgcttcttgggctccaacgatgaggagatgtcttacgataac
aacccctacatccgcgccctggtagatggctgtgctaccaagaaaggctaccagaagacg
gtgctggagattgacacccccaaagtagagcaagtccccatagtggacatcatgttcaac
gactttggtgaagcctcgcagaaatttggatttgaagtggggccagcttgcttcctaggc
tag
DBGET
integrated database retrieval system
