Mastomys coucha (southern multimammate mouse): 116089942
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Entry
116089942 CDS
T07224
Symbol
Nup188
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013
Nucleocytoplasmic transport
mcoc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116089942 (Nup188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116089942 (Nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116089942 (Nup188)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116089942 (Nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
116089942
NCBI-ProteinID:
XP_031225535
LinkDB
All DBs
Position
Unknown
AA seq
1753 aa
AA seq
DB search
MAAAAGGPCVRSSRELWTILLGRSALRELNQIEAELGKYWQRLLEGLSYYKPPSPSSAER
VKANKDVASPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQA
LTLKIADYYYEERTCILRCVLHLLTYFQDERHPYRAEYADCVDKLEKELVLKYRQQFEEL
YRTEAPTWETHGSLMTERQVSRWFAQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
EQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKYALDDRRELHQFAQDG
LICQDMDRVMLTLGDIPHHAPVLLAWALLRHTLSPEETSSVVRKIGGTAIQLNVFQYLTR
LLRSLASGGNDCTTSTACMCVYGLLSFALTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELHKH
KPHDVLSHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVNVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMTQMISAEGMNA
GGYGSLLMNSEQPQGEYGVTIAFLRLVTTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHK
WRYNSHGVRELIGCLILELIHAILNLCQETELHSSHTPSLPSLCICSLAYTEAGQTVISI
MGIGVDTIDMVMAAQPRSDGPEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHRHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSNGSKEFSLGVWSCLH
VVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSVLETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFAYWSGYIK
SLAVYMAETEGSSCTSLLEHQMLVSAWRMLLIIATSHADIMHLTDMAVRRQLFLDVLDGT
KALLLVATSVNCLRLGSMMCTLLLILLRQWKRELGAVDKILGPLTEVLEGVLQADQQLME
KTKAKVFSAFITVLQMKELRVTDIPQYSQLVLNVCETLQEEVIALFDLTRHSLASGSAAE
DKDSMETDDCPRPRHKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLLTTL
EVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSSNGTGQT
PSTSRKSLDAPSWPGVYRLSVSLMERLLKTLRYNFLTEALDFMGVHQERTLQCLNAVRTV
QSLACLEEADHTVGFILQLSHFRKEWHFHLPQLMRDVQVNLGYLCQACTSLLHSRKMLQH
YLQNKNGDGLPSAVTPRVQRPSTTTTVLGAPSGCSSKQPITDTEASEQQALHTVQYGLLK
ILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNV
ALNMLGELDKKKESLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLISQAVRYLRDPAVH
PRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKATSLSKASPESQEPL
IQLVQAFVRHVQR
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgccggtgggccgtgtgtgaggagcagtagagaactctggacaattcta
cttgggaggtcagctcttagagaattgaatcagattgaggcggagctgggtaaatattgg
cagcgcttgttagaaggactttcttactacaaacctcccagtccaagttcagctgaaaga
gtgaaagctaataaagacgtagcgtcacctctgaaggagctgggcttaagagtcagcaag
ttcttgggtcttgatgaagaacagagtgtgcagttactacagtgttaccttcaggaggat
tacaggggtactcgggactcactaaagacagtcctgcaagatgagaggcagagccaggcc
ttaaccctgaagattgcagattattattatgaagaaagaacctgcattcttcgttgtgtc
ttacatcttctgacatatttccaagatgaacgccatccctacagggctgagtatgctgac
tgtgttgacaagctggagaaggagctagttttgaagtaccgacagcagtttgaggagctg
tatagaacagaagcaccgacctgggagactcatggcagtctcatgactgagcgtcaggtg
tctcgatggtttgctcagtgcctccgggaacagtccatgctactggaaatcattttcctc
tattatgcttatttcgagatggcaccaagtgacctactggtgctaaccaagatgttcaag
gagcaagggtttggtagtaggcagaccaatagacatcttgtcgatgaaaccatggatcct
tttgtagatcgcattgggtacttcagtgcccttatcctggtggaaggcatggacatcgag
tccttgcacaagtatgccttggatgacaggcgagagctacaccagtttgctcaggatggg
cttatctgccaggatatggatcgtgtgatgttgaccttgggagacattccgcaccatgcc
cctgtgcttttagcctgggctctcctccgtcacacactgagcccagaagagaccagtagt
gtggtcaggaagataggggggacggccatccagctgaatgtgtttcagtacttgactcga
ctgcttcggtcacttgccagcggaggaaatgattgcaccacgagtaccgcctgcatgtgt
gtctatggtcttctttcctttgctctcacctcactggagctgcatacgttgggcaaccag
caggatgtaattgacacagcatgtgaagtcctggcagacccttctcttccagagctgttc
tggggaacagagccaacctctggcctcgggatcattctggacagtgtgtgtggaatgttt
ccccatctcctttccccacttctgcaattgctgcgagccctcgtgtcagggaagtccact
gccaaaaaagtgtacagtttcctggataaaatgtctttctacaatgaacttcataagcac
aagccccatgatgtgctctctcatgaagatggaactctttggcggaggcaaacacccaaa
ctcctgtaccctctagggggtcagaccaaccttcgcattccgcagggcactgtgggccaa
gtcatgctagatgacagggcttaccttgtccgctgggagtactcctacagcagctggacc
ctcttcacttgcgagattgaaatgctactccatgttgtctccacagcagatgtgatccag
cactgccagcgggtcaagcccatcattgatttggttcacaaggtcatcagcacagacttg
tccatagcagactgcctgctgcccatcacatcccgcatctacatgctgctgcagcggctg
acaactgtgatctcccctccggtaaacgtcattgcttcttgtgtcaactgcttaactgtc
ttggctgctcgaaacccagcaaaggtctggactgatcttcgtcacacaggttttttgcca
tttgtggcccatcctgtttccaacatgactcaaatgattagtgcggagggaatgaatgct
ggagggtatggcagccttctgatgaacagtgagcagccccagggcgaatatggggtcacc
attgcctttctgcgcctggtcaccactcttgtcaagggccagcttggtagtacgcagagc
caaggcctggtgccttgtgtgatgttcgtgttgaaggagatgcttcctagctaccacaaa
tggcgctacaactctcatggtgtgcgggagctgataggttgcctaattctggagctgatt
catgcaatactgaacctgtgccaagagacagagctgcatagcagccacacgcccagccta
ccttccctctgcatctgcagtctggcttatacagaagctgggcagacggtcattagcatc
atgggaattggtgtggacaccatagacatggtgatggctgctcagccccgcagtgatggg
ccagaaggccagggccagggccaactgctgatcaagacagtgaagctggcgttctctgtc
accaacaatgttattcgcctgaaacctccttctaatgtggtgtcccccctggaacaggct
ctcacacagcatggtgcccacgggaacaacctcattgctgtcctagccaagtacatctac
cacagacacgacccagctttgccgcgtctggccatccagctgctgaaacgcttggccacg
gtggccccaatgtctgtgtacgcttgcctgggtagtgatgcagctgccatccgtgatgcc
ttcctgacccgtcttcagagcaagattgaggacatgcgcatcaaagtcatgatcctggag
ttccttacagttgcggtagagacacagccaggtctcatcgagctgtttctgaatctggag
gtgaaggatggcagcaatgggtccaaggaattcagccttggtgtgtggagctgtctccat
gtggtgctggagctgattgattcccagcagcaagatcgatactggtgcccacctctgttg
catcgtgcagctattgccttccttcatgccctgtggcaagaccgtagggacagtgcaatg
cttgtcctcaggaccaaacccaagttttgggagaatttaacgagtccgctgtttggaact
ctttctcctccttcagagacatctgagcccagcgtcctggaaacctgtgccctaatcatg
aagataatatgtttggagatatactatgtagttaagggttcattagaccagtcattaaaa
gatacactgaagaagttttccagcgagaagcgctttgcctactggtcagggtacatcaag
tctttggcagtttacatggctgaaacagagggcagcagctgtacatccttgctagagcat
cagatgctggtgtcggcctggaggatgcttctcatcattgctaccagtcacgcagacatc
atgcacttgactgacatggcagtccggcgccagctttttcttgatgtgcttgatgggacc
aaagcattactccttgttgcaacatcagtgaattgcctccggctgggctccatgatgtgt
accctgctgctcatcctcctacgccagtggaagagagagctgggtgctgtggataaaatc
cttgggcccttgacagaggtcctggaaggggtgctccaggcagaccagcagctcatggaa
aagaccaaggctaaggtgttctctgcgttcatcacagtgttacagatgaaggaactgcga
gtcactgatatcccccagtactcccagctggtactgaatgtctgtgagacccttcaggaa
gaggtgattgcactcttcgacctgactcgccacagtctggcatcaggtagtgctgccgag
gacaaggacagtatggagacagatgactgccctcggccccggcacaaggaccagcgtgat
ggggtatgtgtcctaggactgcatctggctaaggagctctgtgaggtggatgaggatggg
gactcatggctgcaggtgacccgaaggctccccattctgcccacgctgctcaccaccctg
gaggtgagcctccgcatgaagcagaatctgcactttactgaggctgcgctgcacctgctc
ctcaccctggctcgcacccagcagggagccacagcagtggctggagctggcatcacccag
agcatctgtttgccgctcttgagtgtataccagcttagcagcaatggcacaggacagaca
cctagcacctctcgaaagtccctggatgccccgtcctggccgggggtctaccgcctatcc
gtttccttaatggagcggttactcaagactctacgctacaatttcctgactgaggctcta
gacttcatgggtgtccatcaggagcggaccttgcagtgtcttaatgccgtgaggacagta
cagagtctagcctgcctggaggaagcagatcacactgtgggcttcatcctacagctgtcc
cacttcaggaaggagtggcacttccatctgcctcagctcatgcgtgatgttcaggtgaac
ctgggttacttgtgccaggcctgtacttccctcctacacagtcgcaagatgctgcagcac
tacctacagaataaaaatggcgatggccttccttcggctgttactccccgagttcagcgg
ccatccaccaccaccaccgttctgggtgccccatctggctgctcctccaagcagcctatt
actgacactgaagcctcagaacagcaagccttacacacagtccagtatgggcttctcaag
atcctcagcaggaccctggcagccctgcgccacttcactccagatgtctgccagatactg
ttggaccagtccctggatcttgctgagtacaacttcctctttgccctgagtttcaccact
cccacctttgactctgaagtggccccatccttcggaaccctcttggccacagtgaacgtg
gccctcaacatgcttggagagctagacaagaaaaaggaatctctcacccaggctgtggga
ctcagcacacaagcagaagggactcgaacattaaagtccctcctgatgttcaccatggag
aactgcttctatctgctcatctcccaagcagtacgctacctcagggacccggctgtgcac
ccccgggacaagcagcggatgaagcaggagctgagctcagagttgagcacattgctttcc
agcctctcacgatacttcaggaggggagcccccagctcccctgctgctggagtcctgccc
tcaccacagggcaaggccacctctctctccaaagctagcccagagtctcaggagcctctg
atccaacttgtgcaagcctttgtccggcatgtgcagagatag
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integrated database retrieval system
