Mastomys coucha (southern multimammate mouse): 116090162
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Entry
116090162 CDS
T07224
Symbol
Rif1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
KO
K11138
telomere-associated protein RIF1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
116090162 (Rif1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcoc03032
]
116090162 (Rif1)
DNA replication proteins [BR:
mcoc03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
116090162 (Rif1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rif1_N
V-ATPase_H_N
Motif
Other DBs
NCBI-GeneID:
116090162
NCBI-ProteinID:
XP_031226068
LinkDB
All DBs
Position
Unknown
AA seq
2426 aa
AA seq
DB search
MTAPGRSPLEPLLETWEDPSVSPGEQTDAYLSLTSRMTGEEGKEVIAEIEKNLPRLFTVL
KAHISSQNSDLSSAALQALGFCLYNPRITSRFSEANIQELLLTLNRTIKSSDKNVCTRAL
WVISKQTFPAELVGKMVSSIIDSLEGILSKGEIHSAVVDFEALNVIIRLIEQTPIQMGEE
SVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIALITEHLMTTKLISELQKL
FTNKNETYVLKLWPLFVKLLGKALHRSGSFINSLLQLEELGFRSGTPMIKKIAFIAWKSL
IDNFALNPDILCSAKRLKLLMQPLSSIHVRTETLALTKLEVWWYLLIRLGPQLPANFEQV
CVPLIQSTISVDSIASPQGSSSRGSASPGLSPLTPGHKGASPYGTPRVNPSSNIGGMATI
PSIQLLGLEMMLHFLLGPEVLSFAKEHKIVLSLEPLEHPLISSPSFFSKYAHILITAVHD
SFVAVGRDASDAVVSAIWKELIGLVKSVTESGNRKERSGSEVLTLLLKSLENIVKSEVFP
VSKTLVLMEITVKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFNNNLLECGVEDEKF
FLNLETLVGCVLSGPTSPLAFSDSVLTVISQNAEQLANKEHLWRMWSMIVTPLTDVIHQT
NEVNQGDALEHNFSAIYGALTLPINHIFSAQTFPMGTMKTLLKTWSELYRTFTRCAALVA
TAEENLCCEELSSKIMCSLEDEALSDLLFLDRISHIIIVMVDCIDFSPYNMKYQPKIKSP
QRSSDWSRKKKEPLGKLASLFKLIVRVIDSFHTLSLKETYSDTLLAIGNSIISMLSNVFG
HISLPSMIREIFATFTRPLALLYENSKLDEIPKVYTSLNNKLEKLLGEIVACLQFSYLGA
YDSELLRQLSPLLCIIFLHKNKQIRKQSALLWNATFAKATALVYPEELKPILRQAKQKIL
LLLPGLENVEMMEESSGPYSDATENSQLNVKISGMERKSSGKRDSILAHTKDKKENVKLS
AKLKLESSSPKIKSGKPLEEEKSTDFVFIPPEDKETKARILTEHQKEVLKTKRCDIPALY
NNLDASQDTLFSAQFSQEESMESPTLTEKPKEDAKVIKEEQMESAIFIPHDAPENCGIDE
HPEKPSLPNYGGSVAETNPETLSTGFDAKKEILVSSKIMPAECSSSTETSMVSSSSVSNA
TFSETPPQPTSRRQTFITLEKFDDSETRPFSLSPLNNMSSTVTVRSNQDNTTKTDMPPKA
RKREVIHSKSDSEKLANAGKKSSRRWSKAEQSVNRKSKPSLTPEQEEHSFENNPPDLLSP
TECVSENHDHPSEATLEHEDRESKPAVESASLKDLATEEKNVGINMESKENTSSVVASTE
QMVNEDSQAAAVAPNPKTLRRSSRRRSEVVESCSDSQEKESGQQKKERRKEEEKTISKSP
LHIKDDKLPKQKLTADPPIQENLTEKGNSLHARTSGEPSANAEIDQNRRKPELENVSSEG
IGTLDNIDKSSEKPLRGRTRYQTRRASQGLISGVENSESDSSEAKEEVSIKKRSGKWKNK
SSDSVDIEQEEKMVEEEVIKTGNQTHDGQEVPDIGINAAAPVCEKSTNNNRVILQDSSGS
ADSLQVLLTGEDKSKTSKCVDSSFVSLPVPESNLRTRNASKRLYKRDTDSNVDISVSPER
CTQVVECQHKRSRRVRRSKSCECCGEKSQSQEKSFIGLKNSENYAIKSVETKKTDTQVPE
TAPETREANEHAETKLVGEQPIVSFHLDLKEENSTTGDLIKSEAELEEDSKNSLPSEIVN
MKEKTYDTDASEAVSKIQEPCNEEHSAAEAPFLSDCKDISQKHLLDNKVKSPETILKGEF
DISNVGKACKEIAGSSPEGVDTNFRNDAFGTAVSEKKSTQMDVSIDEATEEDNKKDECEA
VTTEVNVEGVATEDFNSSMGLSDTTTPVSKDVQTEQPASGELEGDSNESDTGSCEEMNKE
MESYKAQMNTEIDNARVKDMDRIASTSKSEEALIGRLDVNTESFVSDIEMSSEEETVNCK
NETNIELINELDKAKLSGNKTAVGNDTLQEVCFTSVKVEDLPQSLVSEVASELGAENSNA
SPEKLELDPSFGSASESPSGMQARCVWSPLASPSTSILKRGLKRSQEDEISPVNKVRRVS
FADPIYQAGLADDIDRRCSVVRSHSSNSSPTIKSVKTSPTSHSKHNTTSAKGFLSPGSQS
SKFKSSKKCLITEMAQESMLSPTESVYPALVNCAASVDIILPQITSNMWARGLGQLIRAK
NIKTIGDLSTLTASEIKTLPIRSPKVFNVKKALRVYHEQQMKSRGLEEFPIFDISEKSVN
GVENKTLSTDEERLASDLIDPVNLDTPLSKNLVAQISALALQLDSEDLYSYSGSQLFEMH
EKLGTMANSIIRNLQSRWRSPAHENS
NT seq
7281 nt
NT seq
+upstream
nt +downstream
nt
atgacggccccaggtcgcagccccctggagccgcttctggagacttgggaggacccctcg
gtgtctcccggagagcagacggacgcctacctatctctgaccagtcggatgactggagaa
gaaggaaaagaagtcattgcagaaatcgagaaaaatcttcctcggcttttcacagtttta
aaggctcacatttccagtcagaactcagacctgagtagtgctgctctacaggctttggga
ttttgtttatataatcccagaatcacctcaagattttcagaggcaaatattcaagaactg
cttttaaccttgaatcgtaccattaagagttcagacaaaaatgtgtgtaccagggcactg
tgggtaatatccaaacagacgtttcctgctgaacttgttggcaaaatggtatccagtatt
attgattcattggaagggatactaagtaaaggagagatacattctgctgttgttgatttt
gaggcattaaatgttattataaggctaattgaacaaaccccaattcaaatgggagaagag
tctgtgaggtgggccaaattggttataccattagtagttcactcagcacaaaaagtacat
ctgcggggagccactgctctagagatggggatgccattgctgcttcagaaacaacaagaa
atagccctgattacagagcaccttatgactactaaattaatctcagaactccaaaagcta
tttacgaataaaaatgagacttatgtgttaaaactatggcctttgtttgtcaaacttctt
ggaaaggccttgcaccgaagtgggagtttcatcaactctttgttacagctggaagaactg
ggcttccgtagtggaacacccatgattaaaaaaatagctttcattgcttggaaaagctta
atagataattttgctttaaacccagatatactttgtagtgcaaaaagactgaagttgtta
atgcaacctttgagttccatccatgtgagaacagaaactttagcattaacaaaactagaa
gtctggtggtatttactgataagacttggacctcagctccctgccaattttgaacaggtt
tgtgtgccactgattcagagtacaataagtgttgatagtattgcttcacctcaaggcagt
tcatctcgagggtctgcttctcctggcttaagtccactgactcctggacacaaaggtgct
tctccttatggaactcctcgtgtgaacccgagttcaaatataggtggaatggctacaatc
ccttctattcaacttttgggactggaaatgatgcttcattttttattgggtccagaagtc
ttgagttttgccaaggaacacaagattgtattgagtttagaaccactggaacacccgcta
atcagcagcccttctttcttttccaagtatgcgcatatacttatcactgctgtgcatgat
agctttgtcgcagttggaagagatgcctcagatgcagtagtcagtgctatctggaaggag
ctaattggtttggtgaagtcagtaactgaatcaggaaacagaaaagaaagatcaggttct
gaagttttgaccctcctactaaaatctttggaaaacatagtgaagtcagaagtatttcct
gtatcaaaaacactggttctcatggaaattacggttaaaggacttcctcagaaagtacta
ggttcaccagcatatcaggttgctaatatggatattcttaatggaactccagcattgttc
ttaatccagttaatttttaacaacaatcttttagaatgtggtgtagaagatgaaaagttt
tttctcaatctagaaacacttgtaggctgtgtgctttctggtccgacatcaccactggct
tttagtgattctgtactaactgtgattagtcagaatgcagagcagttggcaaacaaggag
catctctggagaatgtggagtatgatagtcactccactgactgatgtgattcatcagacc
aatgaagtgaatcaaggtgatgccttggaacataattttagtgccatctatggtgcattg
actttaccaataaaccatattttttcagctcagacatttcccatgggaaccatgaaaact
ttacttaaaacttggtcagaattgtatagaacatttactcgctgtgctgctttggtggca
acagcagaagagaatttgtgctgtgaagaactttcttctaaaataatgtgcagtttggaa
gatgaagccctttcagatttgctattcttggacaggatctctcatattattattgtaatg
gttgattgcatcgacttttcaccatataatatgaaatatcagccaaaaatcaaatcacca
cagagatcttcagattggtccagaaagaagaaggagcccctagggaaattggcttcttta
tttaagctaattgtgagagtcatcgattctttccacactctaagcctcaaggaaacatat
tctgatacactacttgctattggtaattctatcattagcatgctttccaatgtatttgga
catatttccttgccctctatgatccgagaaatatttgcaacttttacaagacccctggct
ttactgtatgaaaactcaaagcttgatgaaattcctaaagtatatactagtttgaacaac
aagttagaaaagctattaggagaaattgttgcttgtctacagttcagctatcttggagcc
tatgacagtgaacttcttagacaactttctccactcctgtgcataatatttcttcacaag
aataaacagattcggaaacagagtgctctgttgtggaatgctacatttgctaaagctaca
gccctggtttatcctgaggaattaaaaccgatattaagacaagccaaacaaaaaattttg
cttcttctgcctggtttggaaaatgttgaaatgatggaggagtccagtggaccgtattca
gatgcaacagagaattcacaattaaatgtcaagataagtggcatggaaagaaaatcaagt
gggaagagagattccattttggcacatacaaaggataaaaaagaaaatgtgaaactgtcg
gccaaactaaaactagaatcttcatctccaaaaataaagagtggtaagcctttggaagag
gaaaagtctactgactttgtcttcatacccccagaagataaagagacaaaggcaaggatt
ctaactgagcaccagaaagaagtactcaagacaaaacggtgtgatattcctgccttatat
aataatctggatgcttcacaagacactttattttctgctcagtttagtcaagaagaatca
atggaaagccccactttaactgaaaaaccaaaagaagatgccaaggtaattaaggaagag
caaatggagagtgccattttcatccctcatgatgctccggaaaactgtggaatagacgaa
catcctgagaagccttctttaccaaattatggtggctctgttgctgaaaccaatccagaa
acattgagcactggttttgatgctaaaaaagaaatattagtttcatccaagataatgcca
gctgaatgttcatctagtacagaaacttctatggtcagcagtagttcagtttctaatgcc
actttttctgaaactcctccacagcctacaagtcggagacaaacctttattactttggag
aaatttgatgattcagaaactagaccttttagtctatcccccttgaataacatgtcttcc
actgttacagtgagaagtaaccaggataacacaactaagactgatatgccaccaaaagca
agaaaaagagaagtgattcactcaaaatctgattcagaaaaattagcgaatgcaggtaag
aaatcaagccggagatggagtaaagctgagcagtcagttaatagaaagtctaagccttca
ctgacacctgaacaggaagaacattcattcgaaaataaccctcctgatttgctcagtcca
acagaatgtgtgtcagaaaatcatgatcatccttctgaagctaccctagagcatgaagat
agagaatctaaaccagcagtagaaagtgcttcattgaaagacctagcaacagaagagaaa
aatgtaggcattaatatggaatctaaagaaaatacatcctcagttgtagcatcaacagag
caaatggtaaatgaagatagtcaagctgctgcagtagctccaaatccaaaaacactcaga
cggtcttcaaggaggcgttcagaagtagtagagtcttgcagtgacagccaagagaaggaa
agtggtcaacaaaaaaaggaaagacgaaaggaagaagaaaaaacaatttcaaagagtccg
ttgcatatcaaagatgataagttgcccaagcagaaattaactgctgatccacctatacag
gaaaatttaactgaaaaaggaaatagtttacatgcgagaacttcaggggaacccagtgct
aatgctgaaattgaccaaaatagaagaaagccagaacttgagaatgttagttctgaaggt
attggtactctggacaatatagataagtcatctgagaaacctttaagagggcggacacgt
tatcaaacaagaagagcttctcagggtttgatttctggtgttgaaaactcagaatctgat
agttctgaggcaaaggaagaagtttctataaagaaacgatcagggaaatggaaaaataaa
agcagtgacagtgttgatattgaacaagaagaaaaaatggttgaagaagaagttataaaa
actggaaatcagacacatgatggtcaggaagttcctgatattggtataaatgcagcggct
ccagtttgtgaaaaaagtacaaataacaatagggtgatccttcaggattcttctgggtct
gcagattcactgcaagttctacttacaggtgaggataaaagtaagactagcaaatgtgta
gacagttcatttgtaagtctacctgtgccagaatcaaacctcaggactaggaatgccagt
aagagattatataaacgagatactgatagtaatgtggacatttctgtgtctcctgaaaga
tgcacccaagtagttgaatgccaacacaagagaagtaggagagtcaggagatctaaaagt
tgtgagtgctgtggggaaaaatcacagtcccaggaaaagtcatttattgggttaaagaac
tcggaaaattatgccataaagagcgtggagacaaaaaagacagatacacaagtacctgaa
actgcacctgaaactcgtgaagctaatgagcatgccgaaacaaaattggtaggtgaacag
cctattgtgagttttcatttggatcttaaagaagagaattctactactggtgatttaatt
aagtctgaagctgagttggaagaagatagtaaaaattcccttccatctgaaatagtaaat
atgaaagaaaaaacttacgatacagatgctagtgaagcagtatccaaaatccaagagcca
tgtaatgaagaacacagtgctgctgaggctcctttcttaagtgattgcaaagacatttca
cagaaacaccttttagataacaaagtaaaaagtccagaaactattctgaaaggagagttt
gacatcagcaatgtagggaaggcatgcaaagaaatagctgggtccagtccagagggagtt
gacactaattttagaaacgatgcatttggaacggctgtctctgaaaagaagagtacccaa
atggatgtttccatagatgaggcaacagaggaagataataaaaaggatgaatgtgaagca
gtcacaactgaagtgaatgttgaaggagtagctactgaggacttcaattcaagtatgggt
ctttctgatactaccacacctgtaagcaaggatgttcagactgagcagccagccagtggg
gaactagaaggggatagcaatgaatctgatacaggctcatgtgaggaaatgaacaaagaa
atggaaagttacaaagcccagatgaacactgaaattgacaatgccagggtaaaggatatg
gacaggattgccagcacctccaaatctgaagaagcattgattggaagactagatgtcaac
actgagagctttgttagtgacattgaaatgagttctgaagaagaaactgttaattgcaaa
aatgaaacaaatattgaacttattaatgaattagataaagcaaaattaagtggtaataaa
actgcagtgggaaatgatactctgcaggaagtttgctttacttcagtgaaagtggaggat
ttaccacagtctctggtatctgaagtggcttctgaacttggagcagaaaacagtaatgca
tctcctgaaaagttagagctggatccttcttttggatcagcaagtgaaagtcctagtggt
atgcaggcacgctgtgtctggtcacctttggcttctccatccacaagcattttaaagaga
ggactaaaaagatcccaagaagatgagatctcaccagttaacaaggttagacgtgtgtcc
tttgcagatccaatataccaagcaggattggcagatgatattgataggcgctgctcggtt
gttaggtctcattcttcaaatagctctcccacaataaaaagtgttaaaacttcacctact
tcacattctaagcataataccacttcagccaaaggatttctgtccccaggatcacagagc
tctaaatttaagagctcaaagaaatgtttaattacagaaatggcccaagaatccatgcta
tctccaacagaaagtgtctatccagctttggtgaactgtgctgcatcagttgacatcatt
ttacctcagattacatcaaacatgtgggcaagaggtcttggacaacttatcagagccaag
aatataaagacaattggcgatttgagtacacttacagcctctgaaataaaaactcttcct
atccgttctccaaaggtgttcaatgtaaaaaaagccctcagagtataccatgaacaacag
atgaaatctcgcggacttgaagaatttccaatttttgatatttctgagaagtcagtaaat
ggagtagagaacaagaccctgtccacagatgaagaaaggcttgcctcagatttgattgac
cctgtgaacctagataccccattgtctaaaaatcttgtggcacaaattagtgctcttgct
cttcaactggattcagaagatctctacagttattctggaagccaactatttgaaatgcat
gaaaagcttggtaccatggcaaactctataataagaaatctacagtcacgttggagatca
ccagcccatgaaaattcctag
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integrated database retrieval system
