Mastomys coucha (southern multimammate mouse): 116090255
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Entry
116090255 CDS
T07224
Symbol
Scn9a
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
116090255 (Scn9a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcoc04040
]
116090255 (Scn9a)
Ion channels [BR:
mcoc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116090255 (Scn9a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
DUF6739
Motif
Other DBs
NCBI-GeneID:
116090255
NCBI-ProteinID:
XP_031226346
LinkDB
All DBs
Position
Unknown
AA seq
1985 aa
AA seq
DB search
MAMLPPPGPQSFVHFTKQSLALIEQRISEEKAKGHKDEKKDDEEEGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKTIFRFNATPALYMLSPFSPLRRISI
KILVHNLFSMLIMCTILTNCIFMTMSNPPEWTKNVEYTFTGIYTFESLIKILARGFCVGE
FTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCVRKDVVQNETIESIMNTVESEEELR
KYFYYLEGTKDALLCGFSTDSGQCPEGYTCKKIGRNPDYGYTSFDTFSWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSLGRSRIMGLSESSSETSRLSSKSAKERRNRR
KKKNQKKMSSGEEKGDDEKLSKSGSEESIRKKSFHLGVEGHHRTREKRLSTPNQSPLSIR
GSLFSARRSSRTSLFSFKGRGRDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSS
NISQASRSPPVLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGT
TNQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHT
FLIWNCSPYWIKFKKLIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDEFKNVLTVGN
LVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLL
RVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIN
EDCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVL
NLFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKRGINYVKQTLREFILKSFSKKPKG
SKDTKRTADPNNKKENYISNRTLAEMSKDHNFLKEKDKISGYGSSLDKSFMDENDYQSFI
HNPSLTVTVPIAPGESDLENMNTEELSSDSDSDYSKERRNRSSSSECSTVDNPLPGEEEA
EAEPINADEPEACFTDGCVRRFPCCQVNVDSGKGKVWWTIRKTCYRIVEHSWFESFIVLM
ILLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWL
DFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGSRFSTSQVANRSECFALMNVSGNVR
WKNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVDIQPIYEYSLYMYIYFVIFI
IFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPG
NKFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQTEYMDYVLYWINVVFIILFTGE
CVLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRIL
RLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNF
ETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFV
SYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFCK
LSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRS
QMEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGD
RDDDLPNKEDIVFDNVNENSSPEKTDATASTISPPSYDSVTKPDQEKYETDKTEKEDKEK
DESRK
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgctgcctcctccaggacctcagagcttcgttcacttcacaaaacagtccctt
gccctcattgaacaacggatttctgaagaaaaagccaagggacacaaagatgaaaagaaa
gatgatgaagaagaaggtcctaagcccagtagtgatttggaagctggtaaacagttaccc
ttcatctacggagacattcccccgggaatggtgtcagagcccctggaggacctggaccca
tactatgcagacaaaaaaacttttatagtattgaacaaagggaaaacaatcttccgtttc
aacgccacccctgctttgtacatgctgtctcccttcagtcctctgagaagaatatctatt
aagatcttagtgcacaacttattcagcatgctaatcatgtgcacaattctgacaaactgc
atattcatgacaatgagtaaccctccagaatggaccaaaaatgtagagtatacttttact
ggaatatatacttttgaatcactcataaaaatccttgcaagaggcttttgcgtgggagaa
ttcaccttcctgcgtgatccttggaactggctggattttgttgtcattgtttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtcttgaga
gctttgaaaactatttctgtaatcccaggactaaagaccatcgtgggggccctgatccag
tcagtgaagaagctgtctgacgtcatgatcctcactgtgttctgtctcagtgtgttcgca
ctaattggactacagctgtttatgggcaacctgaagcataaatgtgtccggaaggacgtt
gtacagaatgaaacaatagaaagcatcatgaatactgttgagagtgaagaagaattgaga
aaatatttttattacttggagggaaccaaagatgctcttctttgtggtttcagcacagat
tcagggcagtgtccagaagggtacacttgtaagaagattggcagaaatccggattatggc
tacacaagctttgacacgttcagctgggccttcttggccttgtttcggctaatgactcag
gactactgggagaacctttatcaacagactctgcgtgccgctggtaaaacctacatgatt
ttctttgtcgtggtgatttttctgggctccttttacctgataaacttgatcctggctgtg
gtagccatggcgtacgaggaacagaaccaggccaacatcgaagaagctaaacaaaaagag
ttagaatttcagcagatgttagaccgactcaaaaaagagcaggaagaagccgaggcgatc
gctgcggccgctgctgagtacacgagtttggggcggagcaggattatgggactttctgag
agctcttcagaaacctccaggctgagctcaaagagtgccaaggagaggagaaaccgaaga
aagaaaaagaaccagaaaaagatgtccagtggcgaggaaaagggtgacgatgaaaagctg
tctaagtcaggatcagaggaaagcatccgaaagaaaagcttccatctcggagtggaagga
caccaccggacccgggaaaagaggctgtccacgcccaaccagtctccactcagcattcgc
gggtccttgttttctgccaggcgcagcagcagaacaagtctcttcagttttaaggggcga
ggaagagatctgggatctgagacagaatttgctgatgatgagcatagcatttttggagac
aacgagagcagaaggggttcactatttgtaccccatagaccccgagagcggcgcagcagt
aacatcagccaggccagtaggtccccgccagtgctgccggtgaacgggaagatgcacagt
gcagtggactgcaatggcgtggtgtcgcttgttgatggaccctcagccctcatgcttccc
aatggacagcttcttccagaggtgataatagataaggcaacttccgacgacagcggaaca
actaatcagatgcgcaaaaaaagactctctagttcttactttttgtctgaggacatgctg
aatgacccacatctcaggcaaagagctatgagcagagcgagtattctaaccaatactgta
gaagaacttgaagaatctagacaaaaatgtccaccatggtggtacagatttgctcacaca
tttttaatctggaattgctctccatattggataaaattcaaaaagctcatctattttatt
gtaatggatccttttgtagatcttgcaattaccatttgcatagttttaaacaccttattt
atggctatggagcaccatccaatgactgatgaattcaaaaatgtacttacagtggggaac
ctggtctttacgggcatcttcgcagctgaaatggtactgaagttaatagccatggatccc
tatgaatatttccaagtagggtggaatatttttgacagcctgattgtgacgttgagtttg
gtagagcttttcctagcagatgtggaaggattgtcagttctgcggtcattcagattgctg
cgagtgttcaagttggcaaaatcctggcccacactgaatatgctcattaagatcatcggc
aactcggtgggcgcactgggcaacctgaccctggtgttggccatcatcgtcttcattttt
gccgtggtcggcatgcagctgtttggaaagagctacaaggagtgtgtctgcaaaatcaat
gaggactgcaagctgccgcgctggcacatgcacgacttcttccactccttcctgatcgtg
ttccgtgtgctgtgtggggagtggatagagaccatgtgggactgcatggaggtcgcgggc
cagaccatgtgccttattgtttacatgatggtcatggtgattgggaaccttgtggtcctg
aacctgtttctggctttattactgagttcctttagttctgacaatcttacagcaattgaa
gaagacactgatgcaaacaatctccagattgcagtggccagaattaaaagaggaatcaat
tatgtaaaacagaccctgcgtgaattcattctaaaatcattttccaaaaagccaaagggc
tccaaggacacgaaacgaacagcggatcccaacaacaaaaaagaaaattatatctcaaac
cgtacccttgcagagatgagcaaagatcacaatttcctcaaagaaaaggataagatcagc
ggttatggcagcagtctagacaaaagctttatggatgaaaacgattaccagtcctttatt
cataatcccagcctcacagtgacagtgcccattgcacctggggagtctgatttggagaat
atgaacacagaagagcttagcagtgactcagatagcgactacagcaaagagagacggaac
cgatcaagttcttcagagtgcagcacagttgataaccctcttccaggagaagaggaggca
gaagctgagcccataaatgcagatgagcctgaagcctgttttacagatggttgtgtgagg
agatttccctgctgccaagttaatgtggactccgggaaagggaaagtttggtggaccatc
aggaagacctgctacaggatagtcgaacacagctggtttgaaagcttcattgttctcatg
atcctgctcagtagcggagctctggcctttgaagatatatatattgaaaagaaaaagacc
attaagattatcctggagtatgctgacaagatattcacctacatcttcattctggaaatg
cttctaaaatgggtggcatatgggtataaaacatatttcactaatgcctggtgttggctg
gacttcttaattgttgatgtgtctctagttactttagtagccaacactcttggctactca
gaccttggccccattaaatctctacggacactgagggccctaagacccctaagagctttg
tctagatttgaaggaatgagggtagtggtcaacgcactcataggagcaatcccttccatc
atgaatgtgcttcttgtatgtcttatattctggctaatatttagcatcatgggagtcaat
ctgtttgctggcaagttctatgagtgtgttaacaccacagatgggtcacgattttctaca
tctcaagttgcaaaccgttctgagtgttttgccctgatgaatgttagtggaaatgtgcga
tggaaaaacctgaaagtaaacttcgataacgttgggcttggttacctgtcactgcttcaa
gttgcaacattcaaggggtggatggatattatgtatgcagcagttgactctgttaatgta
gatatacagccgatatatgaatacagcctctacatgtacatttattttgtcatcttcatc
atctttggctcattcttcactttgaatttgttcattggtgtcatcatagataatttcaac
caacagaaaaagaagcttggaggtcaagatatcttcatgacagaagaacagaagaaatac
tataatgcaatgaaaaagctggggtccaagaaaccacaaaaaccaattccaaggccaggg
aacaaatttcaaggatgtatatttgacttagtgacaaatcaagcttttgatatcaccatt
atggttcttatatgcctcaacatggtcaccatgatggtagaaaaagagggacaaactgag
tacatggattatgtcttatactggattaacgtggtcttcattatcctgttcactggggag
tgtgtgctgaagctgatctccctcaggcattactacttcactgtgggatggaacattttt
gattttgtggtagtgatcctctccattgtaggaatgtttctagctgagatgatagagaag
tatttcgtgtcccctaccctgttccgagtcatccgcctggccaggattggacgaatccta
cgcctgatcaaaggcgccaaggggatccgcacgctgctctttgctctgatgatgtccctt
cctgcgctgttcaacatcggcctcctgcttttcctggtcatgttcatctacgccatcttt
gggatgtccaactttgcctatgttaaaaaggaagctggaattaatgacatgttcaacttt
gagacatttggtaacagcatgatctgtctattccagatcaccacctctgcgggctgggat
ggactgctggcccccatcctcaacagcgcacctcctgattgtgacccaaaaaaagttcac
ccaggaagttcagtggaaggagactgtggaaatccttccgtggggattttctactttgtc
agctacatcatcatatccttcctggttgtggtgaacatgtacatcgctgtcatcctggag
aacttcagcgttgccactgaagaaagtactgagcctctgagtgaagacgactttgagatg
ttctacgaggtctgggagaagttcgaccctgatgccactcagttcatagagttctgcaag
ctctctgactttgcagcagccctggatcctcccctcctcattgcaaagccaaacaaagtc
cagctcattgctatggacctgcccatggtgagtggagaccgcatccactgcctggacatc
ttatttgcttttacaaagcgggtcctgggtgagagtggagaaatggattctcttcgttca
cagatggaagaaaggttcatgtcagccaatccttctaaagtgtcctacgaacccatcaca
accacactgaagcgaaaacaagaggatgtatctgcgactatcattcagcgtgcttacaga
aggtaccgccttaggcaaaacgtcaagaatatatcaagtatatacataaaagatggagac
agggatgatgatttgcccaataaagaagatatagtttttgataatgttaatgagaattca
agtccagaaaagacagatgcaactgcctctaccatctctccaccttcctatgacagtgtc
acaaagccagatcaagagaaatatgaaacagacaaaacagagaaggaggacaaagagaaa
gacgaaagcaggaaatag
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integrated database retrieval system
