Mastomys coucha (southern multimammate mouse): 116090480
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Entry
116090480 CDS
T07224
Symbol
Atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04136
Autophagy - other
mcoc04140
Autophagy - animal
mcoc04211
Longevity regulating pathway
mcoc05010
Alzheimer disease
mcoc05014
Amyotrophic lateral sclerosis
mcoc05016
Huntington disease
mcoc05017
Spinocerebellar ataxia
mcoc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116090480 (Atg13)
04136 Autophagy - other
116090480 (Atg13)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
116090480 (Atg13)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
116090480 (Atg13)
05014 Amyotrophic lateral sclerosis
116090480 (Atg13)
05016 Huntington disease
116090480 (Atg13)
05017 Spinocerebellar ataxia
116090480 (Atg13)
05022 Pathways of neurodegeneration - multiple diseases
116090480 (Atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcoc04131
]
116090480 (Atg13)
03029 Mitochondrial biogenesis [BR:
mcoc03029
]
116090480 (Atg13)
Membrane trafficking [BR:
mcoc04131
]
Autophagy
Autophagosome formation proteins
ULK complex
116090480 (Atg13)
Atg1 complex
116090480 (Atg13)
Mitochondrial biogenesis [BR:
mcoc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116090480 (Atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
116090480
NCBI-ProteinID:
XP_031226885
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
METDLSSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALSGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTLTLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAEDAGVT
YPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSSR
LSYQPAVLGLGSADLAYPVVFTAGLNTTHAHQLMVPGKEGGVPLAPNHPAHGAQADQERL
VMHMPSDGTHCAATPSSSEDTETVSNSSEGRASPHDILETIFVRKVGAFVNKPINQVTLT
SLDIPFAMFAPKNLELEDADPMVNPPDSPETTSPLHGSLHSDGSSGGSSGNTHDDFVMID
FKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDFGAQSMAEDLVWKPLPSGLLL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgacctcagttcccaggacagaaaggacttggacaagtttattaagtttttt
gccctcaagactgtccaagtgattgtccaggctcgacttggagaaaagatttgcacccgt
tcgtcatcttccccaacgggttcagattggttcaatttagcaatcaaagatatcccagaa
gtcacccatgaagcaaagaaggctctgtcggggcagctgcctgctgtggggcgatctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagttggaaatttggtgt
cttgaaatgaacgaaaagtgtgacaaagaaatcaaagtttcctacactgtatacaaccga
ttgtcactgctgctgaagtctcttcttgctattacgagggtgacaccagcctatagactc
tccaggaagcaagggcatgaatatgtgattttgtacaggatttattttggggaagttcaa
ctgaatggcttaggagaaggcttccagacagttcgagttggaacagtgggcacccctgtg
ggcaccctcactctttcctgtgcttatagaattaacttggcattcatgtccaccaggcaa
tttgagaggaccccacctattatggggattatcattgatcactttgttgaccgtccttac
cccagctcctctcctatgcacccgtgcaattacagaactgctgaggatgctggagtcaca
tacccatcagtggaagactctcaggaagtgtgtaccacatctttttccacatctcctccc
tcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtgacg
gacactctgagagtccccatggcaggactggccttttcccatcaactctcaagctctcgc
ctttcctatcagcctgctgtcctgggccttggatcagctgacctggcttatccagtagtg
tttactgctggcttaaacactacacacgctcaccagctgatggttcctgggaaggaaggt
ggggtacctcttgctcccaaccaccctgctcatggtgcccaggctgatcaggagagactg
gtgatgcatatgccttctgatggcacccactgtgctgccacaccctcaagcagtgaggac
actgagactgtatctaacagcagtgaaggacgggcctcaccccatgacatcttggagact
atctttgtccgaaaagtgggagcatttgtcaacaaacccatcaatcaggtgactctgacg
agtttggacataccctttgccatgtttgctcctaagaatttggagctggaggatgctgat
cctatggtgaatcccccggactccccagagaccacatctcccctccatggcagcctgcac
tcagatggctctagtgggggcagcagtggcaacacacatgacgactttgttatgattgac
tttaaaccagccttttctaaagacgacattcttccaatggacttggggaccttttaccgt
gaatttcagaatccccctcagctgagcagcctctccatagattttggagctcagtctatg
gcggaagacttggtatggaaaccccttccctcagggctccttctctag
DBGET
integrated database retrieval system
