Mastomys coucha (southern multimammate mouse): 116090813
Help
Entry
116090813 CDS
T07224
Symbol
Spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc05014
Amyotrophic lateral sclerosis
mcoc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116090813 (Spg11)
05022 Pathways of neurodegeneration - multiple diseases
116090813 (Spg11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116090813 (Spg11)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
116090813 (Spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
116090813
NCBI-ProteinID:
XP_031227546
LinkDB
All DBs
Position
Unknown
AA seq
2429 aa
AA seq
DB search
MAAKPGPGSAASPGGAGAMERVLPVLLVRIPAEETAQLGPRAQLHRELEALGSLTAAGSL
QVLSLAPGARGGSSCCLHGPFRQFLWEESQNSSSRDKPKLLVAREDYELLVYEFDLRDGR
CDAALLHSCCGRTLQKLTEDQGVSISFKSLRILSFHNNTSLLLINRCLILRIVFPGRESG
IQVLDCLSLPLPAQAADTIIDAHLCKRFLFILSTVGWIYIFDTVDGMCVAHVDLALVRED
SEQLEPASTFSFTSLKVSQDLDVLVLVSSSNTAVAFNLHLYFRQYPGHLLCAGTLEDLPI
EGPPGTDEDDLVNSVHSMKLTKVSFQVDRSWRAQLSSLNESVRSSEPEVSCYAPWFQGAL
RLESLESGNHAPTVPTLRSLPGDVPRGQCAFLQEHIKSSDPGRPWKTVQLREQEQPAELT
CLSVTGFTALFTWAVGTTSCTIGLWDLETQSMQCFSLSQKCTPVDIGGDQQLCLALTDNG
LSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFF
LKSKENLLTPSSKSPASDQQHHFSSHLYLRQVEELTPALDLLCSAIRESDSETQSKHFAE
QLLHLTLSFLNKQIRELFVHTDELDEHLQKGVAILTSYINELRIFMIKFPWKPGDAIDDS
DVTEGVLTVKDGQVWEELSLEEVIADAILNNRIPEAQTFFRVTGHSAQRLEELVRIGLDL
AFDSLKKNNVEEASRLLRNMGFNVEDELLKICFHTTDKNIRDFLVEILKEKECFSKEERR
TVDFVHQVETLYSGHFQEHARMQIFPRYWIKEQDCFKHKPVLDTFLKCDKKDEFNKQDHR
IALNWAHWWDLQTQECILLPRIRPEEYKAHSPEALWRYLTARHDWSSIRSWVEEFQTQET
VSPQQSKWPPLSADIIEQGTCCHSHMRDKILDKLARSGVFLASELEDFELLLLRLSRIGG
IMQDTLPVQSYKSSAGCDFHSRFILYCLEHSLQHLLYIYLDYYKLGPGNCPFLEKKELHE
AHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQVLIPTNQASVSSMLLEGHTLLALATTM
YAPGGVSQVIQNEDGENCLKKVDPQLLKVALTPYPKLKAALFPQYTAPSILPSDITLYHL
IQSLPPFDPSRLFGWQSANTLAIGDTASQLPHFSSPDLVSKYAVVERLNYAYYLHHGRPS
FAFGTFLVQELIKSKTPKQLIQQVGKEAYILGLSSFNNPSVGAACVCFLELLGLSSLKLR
VDLKMANVILGSKRRNEDAHPSFITESLAEKLSKLADGDRATTEELLLLLEEGVWDSVEQ
QGFNRLSSESSSQWALVLQFCMLHDRKLSVSYLRECAKANDWLQFLVHSQLHNYHPEEVE
SLLQYFSPVLQSHLKLASEKLSPGSISRDASCIQELQKNKGERRDFFEILHRCSDESTSW
CWLLAEAVKHRVPILSVLASCIQGASVVPCLCVWIVTSVEDKVAAEAMGHIQISVEDHHW
SLEDLSIIWRTVLTRRKSHTLIRGFRLFLKDSPLLLIMEMYELCMFFKNYEKAKVKLLEF
QKSLETLDTAATRVLPVIPATWMKDQVCFLLKLMPQQCETQYELGKLLQLFVGTEQLFSN
GPDVQKLCLLSQVLKDTPIAISPTVISSYSTENFQRECRSILEKLKADGQFAVARSVAEL
AALPVDSLLIEQLTREMQTLAHTQQWSLKQARLDFWRKCHENFKKNSISKRAASSFFSSQ
APVVREHPAEQGSLEEPHLLLTLAGHWLAQEEPAPVEELEELEKQIWICRITQHTHAGAE
EEAKPSLSQHKLAAAELSLDSLASELSFSKLAALNTSKYLDLNGLPSKETCENRLEHKEQ
ESLNTLIGQLLDGGYVHEASRVCQYFRFYSQDLVLVLHCRALASAEASVEDLHSEILALL
SSAALPEEVESPSAPLRKVQSTSSLDSQSFAMVPPTDEVARNLHTLISKCLHGKNYCRQV
LCLYELAKDLGCPYGDVAARDSEAMLRAILASQRPDRCRQAQVFINTQGLQPDTVAELVA
EEVTRELLTPAEGTGEKQPFHPAEESQTFLQLTALCQDRTLVGMKLLDKIPSVPHGQLSC
TTELLILAHHCFSFTCHMEGIIRVLQAARMLTDNYLAPNEEYGLVVRLLTGIGRYNEMTY
MFDLLHQKHHFEVLMRKKLDPTGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGEN
HEAAACTQLKLIESQPWEESLKDGAQLKQLLLKALTLMLDAAESYAKDSCVRQALHCNRL
TKLITLQIHFLNSGQNTMLINLGRQKLMDCIMTLPRFYQASIVAEAYDFVPDWAEVLYQQ
VILKGDFSYLEEFKQQKLLRPNIFEDISKKYKQHQPTDRVTENLKKLLSYCEDIYLYYKL
AYEHKFFEIVNMLLKDPQTGCCLKDMLQG
NT seq
7290 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaagccagggcccggaagtgctgcctccccgggcggcgccggggccatggag
cgagttctgcccgtactgctggtgcggatccctgccgaggagacggcgcagctggggccg
cgggcgcagctgcaccgagagctggaggccctggggagcctgacggctgccggcagcctc
caagtgctttccttggcgccgggcgctaggggtggaagcagctgctgcctccacggcccc
tttaggcagttcctatgggaagagtctcagaactcctcttcaagagacaagcccaaactg
cttgttgctagagaagattatgaactgctcgtgtatgaattcgacttgagagacggaaga
tgcgacgcagccttattacacagctgttgtgggaggacgctgcagaagctcactgaagat
caaggtgtcagtatttccttcaagtctttgagaattctgtcatttcacaacaacacgtca
ttactgctcatcaatagatgtctcatcctacgcattgtgtttccggggagagaatctggg
attcaagtgttggactgcctctcactgcccttgcctgcacaggcagcggacacgatcatt
gatgcgcacctctgcaagagatttctttttattctgagtacagtaggctggatctatatt
tttgacactgtggatggcatgtgtgtagcacatgtggacttggctcttgtcagagaagat
tctgagcagctggagccagccagcaccttttcctttacatcactgaaagtgtctcaggac
ttagatgtcttggtgcttgtcagctcatccaataccgcagttgcttttaacctacatttg
tatttcaggcaatacccaggacacctactgtgtgcaggaacactggaagaccttcctatt
gaagggcctccaggaacagatgaggatgacctggttaactctgtccacagcatgaaactg
accaaggtgtcctttcaagtggataggtcctggagagcccagctgtcatcactgaatgaa
tccgtgaggagctcggaaccagaggtttcctgctatgctccctggttccagggtgctttg
cgcttggagtccctggaatctggtaaccacgcccccactgtaccaaccctccgttccctt
ccaggggatgtcccacgtggccagtgtgcttttctccaggagcacatcaagagcagtgat
ccaggaaggccgtggaagacagtgcagctgagggagcaagagcagcccgcagagctcacg
tgtctgtccgtgacaggattcactgcactgtttacttgggcagtaggaacgaccagctgc
accatcggcctctgggacttggagacccagagcatgcagtgtttttctctcagccagaag
tgtactcctgtagacatcggcggagaccagcagctgtgccttgctctgacagacaatggt
ctgtctctgattttgtttggtttaactcaagaggagtttttgaacagactaatgatccat
ggcagcgccagcactgtggactccctttgtcatctcaatggttggggacggtgctccatc
cccatccacgctctagaggccggaatagaaaaccgtcagctggacacagtagatttcttc
ttgaagagcaaggaaaatcttcttactccgtcttcaaaatctcctgcttctgatcaacag
caccacttttcatcccatctatacctaaggcaggtagaagagctgaccccagccctggat
ttactttgctcagcaattagagaaagtgactcagaaacccaaagcaagcactttgctgag
cagctgcttcacctcacactatctttccttaacaagcaaataagagagctttttgttcac
accgatgagctagatgagcatttacagaaaggagtggccattttgaccagctacatcaat
gaacttcggatttttatgataaagttcccttggaagccaggagatgccatagatgactct
gatgtgactgaaggtgtcctcacggtgaaggatggccaggtttgggaggaactcagcttg
gaggaagttattgctgatgccattttaaataacagaataccagaggcacaaactttcttt
cgggttactggtcattctgctcaacgattggaggaactggttagaataggcctagatttg
gcatttgacagtttaaaaaagaacaacgtggaggaggcctccaggctcctgaggaacatg
ggcttcaatgtggaagatgagttgcttaagatatgcttccatacaactgataaaaatatt
cgagactttttggttgaaattttaaaagaaaaggaatgtttttctaaagaagaaagaaga
actgtagactttgttcatcaagttgaaacactttattcaggacacttccaggaacatgcg
cggatgcagattttccccaggtattggataaaggaacaggactgtttcaaacataaacct
gtcttggacacattcctcaaatgtgataaaaaagatgagtttaataaacaggaccataga
attgcattgaattgggctcactggtgggatcttcaaacacaggaatgtatccttctcccc
agaataagaccagaagaatacaaagcacattccccagaagccctttggagatacctcaca
gctcgccatgactggtcaagcatccgctcgtgggtggaagaattccagacccaggaaacc
gtgtcacctcagcagagcaagtggccccctctgagtgctgacatcattgagcagggcact
tgctgccacagtcacatgagggacaagattttagacaagctggccagaagtggcgttttt
cttgcatctgagctggaagactttgaactcctcctcctgaggctgagccggattggaggc
ataatgcaggacaccctccccgtgcagagctacaaatcttcagcagggtgcgattttcat
tcccgattcatcctctactgtttagagcacagcctgcagcaccttctctacatatacctt
gactattacaaacttggtcctggaaattgtccttttttggaaaagaaagaactacatgaa
gctcacccttggcttgaatttttggttcagtgtcgacaagtttccagtaacttgacagat
cccaaactgatctttcaggctagccttgcaaatgctcaggttttgatccctaccaatcag
gccagtgtgagcagtatgctgttggaaggacacaccctcttggcccttgctaccaccatg
tatgctcctgggggtgtcagccaggtcattcagaatgaagacggcgagaactgtttaaag
aaagtggacccccagctactgaaggtggccttaacaccttacccaaagctcaaagctgct
ctcttcccacagtacactgctcctagtattctgccctctgatatcacactctaccacctc
atccagtccttgccaccctttgatcccagcagactgttcggctggcagtctgccaacaca
ctcgctatcggcgatacagccagtcagctcccacacttttccagccctgacctggtgagt
aaatacgctgtggtggaacgtctcaattatgcatattacttacatcacggacgcccatca
tttgcctttggtacctttctggtccaggagttaatcaagagtaagactcccaagcaactg
atccagcaagtaggcaaggaggcctatatcttagggctgtcttccttcaacaacccttcg
gtaggggctgcctgtgtctgcttcttagaattgcttggcctcagcagcctcaagctcaga
gttgacctgaaaatggcaaatgtaattttgggctccaagcgtagaaatgaagatgctcat
cccagcttcatcacagagtctctggctgagaagctgtcgaagcttgccgatggtgacaga
gcaaccacagaagagctgctccttctcttggaggaaggcgtgtgggacagcgttgagcag
cagggctttaacaggttgtccagcgagtccagcagccagtgggcattagtgcttcagttc
tgcatgctccatgataggaaactgagtgtgtcctaccttagagaatgtgccaaagcaaat
gattggctacagttcctggttcacagccagctccataactaccacccagaagaggtggaa
tctcttcttcagtatttcagtcccgtccttcagagccacttgaagctggcgtctgagaaa
ctgtcaccagggtccatctccagggatgccagctgcatccaggaactccagaagaacaaa
ggggaaaggagggatttctttgagattctccaccggtgctcggatgagtcaacctcttgg
tgctggctcctggctgaggctgtgaaacatcgggttcccatcctcagtgtcctggcctca
tgtatccagggtgccagtgttgtcccctgtctctgtgtttggattgtcacttctgtggag
gacaaggttgcagctgaagcaatgggacacattcagatctctgtggaggaccatcactgg
agcctggaggacctgtccatcatctggaggactgtgttgacaagacgcaagagccacact
ctcatccgaggtttccggctcttccttaaggattccccacttctattgattatggagatg
tacgaactgtgtatgttcttcaagaattacgagaaagccaaagttaagcttttggagttc
cagaaaagccttgaaacgcttgatacagctgctacgagggtccttcctgtcatacctgcc
acatggatgaaggaccaggtgtgtttccttttgaaacttatgccgcagcagtgtgagacg
cagtatgagctggggaaactcctccaactgtttgttgggactgagcagctcttctccaat
gggccagacgtgcagaagctgtgtctcctcagccaggtactgaaggacacacctatcgcc
atcagccctacagtcatttccagctacagcactgagaactttcagcgggaatgtcgatct
attttggagaagctaaaggcagatgggcagtttgctgtggccaggagtgtggcagagtta
gcagccctgcctgtggacagcttgctgattgaacagttaacccgggaaatgcaaacgcta
gcgcacacgcagcagtggtccctgaaacaagcaagacttgacttctggagaaaatgccat
gaaaattttaagaaaaactctatttcaaagagagcagcctcttccttcttctctagccag
gccccagtggtgagggagcaccctgctgagcagggcagccttgaggagccccatctgctg
ctcactctggcgggccactggcttgcccaagaggagccggctcccgtggaagaactggag
gaactggagaaacagatttggatctgccgcatcacccagcacacacatgcaggggctgaa
gaggaagccaagcccagcctctctcaacacaagttggctgccgctgaactgtctcttgat
agcttagccagtgagctgtccttctccaagcttgctgctttgaacacatccaaatactta
gatcttaatggtcttccatccaaggagacgtgtgagaacagactggaacacaaagagcag
gagtcactgaacactctgatcgggcagctgctggatggtggctatgtgcacgaagcaagc
agagtgtgccagtatttccgtttctatagtcaggatctagtgctggtgttgcactgtaga
gccttggcctccgcagaggccagcgtggaagatttgcactcagagatcctcgccctcctc
tcaagtgccgccctgcctgaggaggtggagagtccgagcgcccctcttcggaaagtccaa
agcacttcaagtttggacagtcagtcatttgcgatggtaccacccactgatgaagtggcc
cggaacctccacactctcataagcaagtgtctccatggcaagaactactgccgacaggtc
ctttgtctatatgaacttgccaaggacttgggctgtccctatggagatgttgctgctagg
gacagtgaagccatgcttcgagccatcttggcttctcagcggcctgaccgatgcagacag
gcccaggtcttcatcaatacccagggccttcaaccagacaccgtggctgaactagtggct
gaagaggtgacacgggaactactgactccagcagagggaacaggagaaaagcaacctttc
cacccagcagaggaaagccagacatttcttcagctaactgctttgtgtcaagaccgtaca
ttagtaggcatgaagttgttggacaagattccctctgtcccccacgggcagctgtcctgc
accacagagctcctgatcctggcccatcactgctttagctttacgtgccacatggagggt
atcatcagagtcctacaggctgcccggatgcttacagataactacttggctcccaacgag
gagtacggattagtggtacgcctcctcactggcattggacgctacaatgagatgacgtac
atgtttgacttgctgcatcagaagcatcattttgaagttctgatgaggaagaagctagat
ccaactggcactctgaagacagccctactggactacatcaaacgctgccgccctggagac
agtgaaaagcacaacatgattgccctgtgcttcagcatgtgccgtgagataggagagaac
cacgaggcagcagcctgcacccaactgaagctgattgagtctcagccctgggaggaaagc
ctcaaggatggagcccaactaaaacagctcttgcttaaagccttgactttgatgctggat
gcagcagagagttacgccaaggattcctgtgtccgacaggccctacactgtaaccggctt
accaagctgataacactacagattcacttcctcaacagtggccaaaatacaatgcttatc
aacttgggccgtcagaagctaatggactgcatcatgaccctacctcggttctaccaggct
tctattgtagctgaggcctatgactttgttcctgattgggctgaagtactctaccaacaa
gtgattcttaaaggagactttagttatttggaagaatttaagcagcagaagttactaaga
cccaatatatttgaagacatttccaaaaaatataaacaacaccagcctaccgacagggtc
acagaaaacctgaagaagttactttcatattgtgaagatatctacctatattataagttg
gcatatgaacacaaattttttgaaattgtaaatatgcttctgaaggaccctcaaacagga
tgctgccttaaagatatgctccaaggttag
DBGET
integrated database retrieval system
