KEGG   Mastomys coucha (southern multimammate mouse): 116091473
Entry
116091473         CDS       T07224                                 
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    116091473
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcoc03021]
    116091473
   03036 Chromosome and associated proteins [BR:mcoc03036]
    116091473
Transcription machinery [BR:mcoc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     116091473
   Coactivators
    SAGA/TFTC/STAGA complex
     116091473
Chromosome and associated proteins [BR:mcoc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     116091473
    STAGA complex
     116091473
    TFTC complex
     116091473
    SAGA complex
     116091473
    SLIK complex
     116091473
SSDB
Motif
Pfam: TFIID_NTD2 WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_IFT122_1st NBCH_WD40 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_Vps41 Beta-prop_DCAF4 Ge1_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 116091473
NCBI-ProteinID: XP_031228756
LinkDB
Position
Unknown
AA seq 321 aa
MKRVRTEQVQVAVSCYLKRRQYVDSEGPLKQGLRLSQTPEEMAANLTVQSESGCTNSVSA
APCQAEPQQYEVQFGRLRSFLTDSDSQYSREVLPLLYPLFVYLHLNLVQSGPKSTVESFY
SRFHGMFLQNASQKDIIEQLQTTQTIQDILSNFQLCAFLDNKYVVRLQEDSYNYLICYLQ
SDNTALCKVFAVHIHLDVQPAKRTDYQLYXRSESSSLEPPDVPNPILQNEAGTLFKELRG
HTDSITSLAFSQDSGLIASASMDNSVRVWDIRSTCCNTPADGSLGELVGVYTGQMSNVLS
VQFMACNLLLVTGITQENQEH
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaacgagtgcgcacggagcaggttcaggtggcagtatcctgctacctcaaacgccga
cagtacgtggactcagaaggccctttgaagcaaggcctgagactctcacagacccccgag
gagatggcagccaacctcacagttcaatcagaatctggttgtaccaattcggtgtctgca
gccccttgccaggcagaacctcagcaatatgaagtacagtttggacgactgaggagcttt
ctcactgattctgactcccagtacagccgtgaagttctgcctctcctctaccctctcttt
gtctaccttcacctcaacctggtccagagcggccccaagagcactgtggaaagcttctat
agccgcttccatggaatgttcctacagaatgcaagtcagaaggacatcatcgagcagcta
cagaccacgcagaccatccaggacattctgtcaaacttccagctttgtgcattcctggac
aacaagtatgtagtccgtctccaggaagatagctacaactaccttatctgctacctccaa
agcgacaacactgccctgtgcaaggtgtttgccgtgcacattcacttggacgtgcagcct
gccaagaggacagactaccagctgtatnngcgcagtgaaagcagcagcctggagccacca
gatgtgcccaaccctattctgcagaacgaagctgggacactttttaaagaactgagaggc
cacacggacagcatcaccagtctggcctttagccaggacagcggtctgattgcttctgcc
tccatggacaactctgtgcgtgtctgggacatcagaagtacgtgctgcaacacacctgct
gacggctctctgggtgagcttgtgggcgtgtacactgggcagatgagcaacgtcctaagt
gtgcagttcatggcatgcaacctcctcctggtgactggaatcacacaagagaatcaagaa
cattaa

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