Mastomys coucha (southern multimammate mouse): 116093732
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Entry
116093732 CDS
T07224
Symbol
Synpo2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116093732 (Synpo2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
mcoc04990
]
116093732 (Synpo2)
Domain-containing proteins not elsewhere classified [BR:
mcoc04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
116093732 (Synpo2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
116093732
NCBI-ProteinID:
XP_031231209
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MGTGDFICISMTGGAPWGFRLQGGKEEKQPLQVAKIRSQSKASGSGLREGDEVVSINGNP
CADLTYPDVIKLMESITDSLHLLIKRPSSGTSETSDSETENTNHQHLTDEGPMESTTLQI
QQATKTQSKDFFLAPVQTKVPLTEDQGNAWGYAECTKEEQVPQMLGSQEGPLVEEVILRN
KAAAGQAGHVVELQLSLSKESHQCTSGPIVTLQGNEKFKSPDPDWSSQHERTVHINSIPT
PEKADSSLTSSTAGQTSGGGRELRVIQGRDPGGAGLPQVEVILDCSDRLKAQECRLQTGR
GCVASPVEGGRSEAPPSLVSFALSSEGTEHGEDQRSGKDHSRPHKHRARHARLRRSESLS
EKQVKEAKSKCKSIALLLTDAPNPNSKGVLMFKKRRRRARKYTLVSYGTGELEREEEEED
QETGDKDEISDVAFLGTSESEVDEELLSDIDDSTQVVNFDWDSGLVDIEKRLNRGDKMEM
LPDTTGKGALMFAKRRERMEQFTAQNEEEKTGGMAGGGPDALQTDGLRTMTSYQRKEESV
RMQSSVSESSFQMGRSLASVPQQNGFSGVSETAGAQRMIPMNRTAKPFLGSVNQPAAPFS
PTRSVTSPISDFPAPPPYSAVSPPPEAFSRGISSPVAGPAQPPPWPQPAPWSQPAFYDSS
EQIASRDERIAVPAKRTGILQEAKRRGTTKPMFTFKETKVSPNPELLSLLQNAEGKRGTG
GDSGPEEDYLSLGAEACNFMQSSAKQKTPPPVAPKPAVKSPSSSSQPVAPVSPVWSPGVA
PAQRPAFSTSNQPNPPQVTSVSSIKIAQPTVPPARPASALNLAGPFKGPQAVVVSHNYTP
KPSAPTPLVNAAPAGAGGPSNELPGMSGKGAQLFAKRQSRMEKYVVDSDTVQAHTARAQS
PTPSLPASWKYSSNVRAPPPVAYNPIHSPSYPLAAIKSQPPGAQASKTSKKKGKKPLNTL
DVMKHQPYQLNASLFTFQPPDSKDGLPQKSTVKVSSALAMKQALPPRQADVGSPTNAQAS
SVYSVPAYTSQPNFFAEATSPVSASPVPVSVPTSPKQESTSTSYFVAPRPKFSAKKSGVT
VQESGRSLSLPGRSAPPIFSASPWLYQPACSYSSKPTFELEKATKRPTPWEAAAKSPLGL
VEDAFRPRNIQESIVVNVVSAARRKVFPGSQEDWKERLSFVPQTQKTNMSFSERQEYNAP
SPINSHVSSHSLYSSQLPYVCYRQESGNDLKMMSEETRSEYCLPPGGYNYNPHPRGWRHQ
P
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggagatttcatctgcatttccatgactggaggggcgccctgggggttccga
ctgcaaggaggcaaggaggagaagcagcccttgcaagtcgccaagattcgaagccagagc
aaggcatcgggctccgggctgcgtgagggggatgaagtggtgtccatcaacggtaaccca
tgtgcagatcttacttaccctgacgtcatcaaactcatggaaagcataacggattctctc
cacttgcttattaaaagaccctctagtggaacaagtgagacttcggattctgaaacagaa
aatacaaaccaccagcatcttacagatgaggggcccatggaaagtaccaccctacagatt
cagcaagccaccaagacccagagcaaagacttctttcttgctccagtccagactaaagtt
cccctaactgaggaccaaggcaacgcctggggttatgcagaatgtacgaaagaagaacag
gttccccagatgcttggctcccaagaaggacccttggtagaagaggtcatcttaaggaac
aaggcagcagcaggccaggcaggccatgtggttgagcttcagctgtccctctcaaaggaa
agccatcaatgcaccagtggccctatagtgactctccagggaaatgaaaaattcaagtct
ccagacccagactggagctcacagcacgagaggactgtccacataaattcgatccccact
cctgagaaagcagactcttctctgacgtccagcacagcaggccagacctccggtggcggc
cgagagttgagagtgatccagggaagagacccaggaggcgcagggctgccccaggtggaa
gtgattctagattgctctgacaggctgaaggctcaagagtgcaggctgcagacaggaagg
gggtgtgtggcttctcccgtggaaggagggcggtcagaagcacctccttctctggtctcc
tttgcactctcatcagaaggcacagagcacggagaagatcaacgctcgggaaaggatcac
agcagaccacacaagcaccgagcacgacatgctcggctcaggaggagtgaaagtctatca
gaaaagcaagtgaaagaagcaaagtctaaatgcaaaagcatcgccctcctcctaacagat
gctcccaacccaaactccaagggggtgttgatgtttaagaagcggaggcggagggcccgg
aagtacaccctagtcagttacggtactggggagcttgaacgagaggaggaagaggaagac
caggaaacaggtgacaaggacgagataagtgacgttgcgtttcttggaaccagtgagtcg
gaagtggatgaagagttgctgtcggacattgacgacagcacccaagttgtgaactttgat
tgggattctggactggtggacattgaaaagagactgaaccgaggggacaagatggagatg
ttgccagacaccacaggcaagggagcgctcatgtttgccaagaggagagagaggatggaa
cagttcacagcccaaaatgaagaggagaagacaggtgggatggcaggcggaggaccagat
gccctgcagacggacggcctgagaaccatgacttcttatcaaagaaaagaagaatccgta
agaatgcagagctctgtgagcgaaagctccttccagatgggacgcagtcttgccagtgtg
ccacaacagaatggcttcagtggagtgtcggagacagcaggggcccagaggatgatccct
atgaatagaaccgccaagcccttcctggggtctgtgaaccagccagcagcgccattctcc
ccaacgcggagtgtgacaagtcccatttctgacttccctgctccgccaccatattctgcg
gtctcacctccaccggaagccttctccagggggatctcaagcccagttgctggcccagca
cagccccctccgtggccccagcctgctccgtggtcccaaccagccttctatgattcatct
gagcaaatagcttcccgcgacgagaggatcgcagtgccggccaaaagaaccggaatactg
caggaagccaaaagacgaggcacaacgaaacccatgtttactttcaaagaaaccaaagtg
agccccaacccagaactcctgtcacttcttcaaaatgcagaaggcaagcggggcaccgga
ggggactctgggccggaagaagactacctcagtttaggcgcagaggcttgcaacttcatg
cagagttctgccaaacaaaagaccccacctcctgtcgctccaaagcctgcagtcaagtcc
ccctcttcctcctcgcaaccagtagccccagtttctccagtctggtctccaggagtggct
ccagcccagcgtcccgccttctccacatcaaatcaaccgaatccaccacaggtcacctct
gtgtcctccatcaaaatagcccagcctaccgtccctcctgcccggcccgcgagtgcactg
aacctggctggtcctttcaaaggtccccaagcagtcgtggtcagtcataactacacaccc
aagccatctgcacccacaccattagtcaatgctgctcctgctggtgcagggggaccatcc
aatgagcttcctggtatgagtgggaaaggagcccaactcttcgctaaaaggcagtcaagg
atggagaaatacgtagtagattccgacacagtgcaggcccacacggctcgggcccagtct
cctactccatccctgcccgccagttggaagtactcctccaatgtccgagcaccccctcct
gtggcctacaatcctatccattccccctcctaccccctggctgctatcaagtctcaacca
ccgggtgcccaagcctctaaaacgagcaagaaaaagggcaagaaacctcttaacactttg
gatgtcatgaagcaccaaccgtatcagctcaatgcatctttgtttacctttcaaccccct
gattcaaaggatggcctccctcaaaagtcaacggtcaaggtcagttcagccctggccatg
aagcaagccctccctccccggcaggcggatgttggctctcccacaaatgcgcaggcttct
tctgtgtattcggtaccagcctatacctctcagcccaacttcttcgcggaggccacctca
ccagtcagcgcatccccggtgcctgtgagtgtccccacctctccgaagcaagaatcaacc
tccacatcctatttcgtggctccaaggccgaagttctcagccaagaaaagtggggtcaca
gttcaggagagcggacgctccctttctctccctggaaggtcagccccacccatcttttct
gcatctccctggctgtaccagcctgcctgcagttactccagcaaaccaaccttcgagctg
gagaaagctactaagagaccgacaccttgggaagcagcagccaagtcccctctcggtcta
gtggaggatgcgttcagaccgaggaacatccaggaatccatcgtggtgaatgtagtctct
gcagctcggaggaaggtgttcccagggtcccaggaggactggaaagagagattgtccttt
gtccctcaaactcagaagaccaacatgagcttttcggaaaggcaggagtataacgctcca
tccccaatcaacagccacgtatctagccactccttatatagttcccagttgccatatgtg
tgttataggcaggagtccggaaatgatttgaaaatgatgtccgaggagactaggtctgaa
tactgccttccaccaggtggttataactataacccacacccaagggggtggagacaccaa
ccatga
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