Mastomys coucha (southern multimammate mouse): 116093786
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Entry
116093786 CDS
T07224
Symbol
Col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116093786 (Col25a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcoc00536
]
116093786 (Col25a1)
Glycosaminoglycan binding proteins [BR:
mcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116093786 (Col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
LEA_1
Motif
Other DBs
NCBI-GeneID:
116093786
NCBI-ProteinID:
XP_031231353
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MLVKKLAGKGGGRESGSEDPRPLGQLCAGTLPSCTALATLLSVVAVVFCLYLGVKTNDLQ
ARIAALESAKGTPSFHPLPDTMDELKAMVQEKVERLLAQKSYEHMAKIRTAREAPSECNC
PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
PPGQKGSIGAPGTPGMDGQKGEPGPPGEAGQSGLPGPKGEPGKEGEKGDAGENGPKGDAG
EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
KGERGEAGPPGRGERGDPGAPGPKGKQGESGARGPKGSKGDRGDKGDSGALGPRGPPGQK
GDPGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGVDGEQGL
KGSKGDVGDPGMPGEKGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPP
GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGADGPIGPH
GPAGPKGERGEKGAVGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEKGKK
GRKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgaagaagcttgcagggaaaggagggggacgagagtctggatcagaagatccg
cgccccttgggacagctttgtgcgggcaccctgccctcgtgcaccgccctggcgaccctc
ctgtcagtggttgctgtggttttttgtttgtatctcggggtgaaaaccaacgacctccag
gcgaggattgctgctcttgaatctgctaaagggaccccttccttccatccgctgcctgac
accatggatgagctgaaggcaatggttcaggagaaagtggagcgtctcttggctcagaaa
tcctatgaacatatggctaaaataagaaccgccagggaagcaccttcagagtgcaactgc
ccagcaggtcctccagggaaacgagggaagagaggccgaagaggagaatctggtcctcct
ggtcagcctggtcctcagggcccccctggtccgaaaggtgataagggagaacaaggtgat
caggggcctcggatggtgtttcctaaaatcaatcatggctttctctctgctgatcagcag
ctcattaaacgccggctgattaagggcgaccaaggacaggcagggcctccaggaccccca
ggccctcctggtccaagaggcccacctggggacacagggaaggacggcccccgaggaatg
ccaggagtacccggtgaaccaggaaaaccaggagaacaaggcttgatgggacctctgggg
cctccaggacaaaagggttccattggagcacctgggaccccaggcatggatgggcaaaag
ggtgagcctggaccacctggagaagccgggcaaagtggactgccgggacctaagggggaa
cctggaaaagaaggagaaaagggagatgctggagaaaatggtcccaaaggtgatgcagga
gaaaagggtgaccctggatcatctgctgcaggaattaagggagaacctggagaatcgggc
cgtcccgggcagaagggtgaaccagggctgcctgggctgcctggacttccggggataaag
ggagaaccaggcttcattggtcctcaaggagaaccgggcttaccagggttaccaggaaca
aaaggtgaacgtggggaggcggggcctcctggaagaggtgaacgaggggatcctggagcc
ccggggccaaaggggaagcaaggtgaatcaggagctagaggcccaaaggggtcaaagggt
gatcgtggagacaaaggagactctggagctctgggaccacggggtccacctgggcaaaag
ggagatccaggagccactgagatcatagactacaatggcaacctccatgaggccttacag
aggattaccaccttaactgtcacgggcccccctggacctcccggacctcaaggactacaa
gggccaaagggtgagcaaggttctccaggaatccccggagttgatggagaacagggactc
aaaggctcaaagggagacgtgggagacccaggtatgccaggcgaaaaaggaggaatcgga
cttcccggattgccgggtgccaatggagtcaagggagagaaaggagactccggtttgcca
ggccctcaggggccttctatcataggcccaccaggccctccaggtccccatggcccacct
ggtcccatggggccccatggacttcctggaccaaagggtgaaccagggttaaatggtgtt
aaaggattgaagggtgaaccaggtcaaaagggtgacagaggaccccttggtcttccagga
gcatctggcttagacggaaagccaggatcccggggtgctgatggtcctataggaccccat
ggccctgcaggtcccaaaggagaaagaggagagaagggagctgtgggagaacctggaccc
agagggccctatgggctgcctggcaaagatggagagcctggtcttgatggcttccctggt
cctcgaggcgagaagggtgacctgggagaaaagggagaaaagggggaaaagggaaagaag
ggcagaaaggggcctaaaggggagaaaggagagcagggcgctcctggattagatgcaccc
tgcccgttgggacctgatgggttacctatgcctggctgctggcaaaagtga
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