Mastomys coucha (southern multimammate mouse): 116094489
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Entry
116094489 CDS
T07224
Symbol
Nxf5
Name
(RefSeq) nuclear RNA export factor 5
KO
K14284
nuclear RNA export factor
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03008
Ribosome biogenesis in eukaryotes
mcoc03013
Nucleocytoplasmic transport
mcoc03015
mRNA surveillance pathway
mcoc05014
Amyotrophic lateral sclerosis
mcoc05164
Influenza A
mcoc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116094489 (Nxf5)
03015 mRNA surveillance pathway
116094489 (Nxf5)
03008 Ribosome biogenesis in eukaryotes
116094489 (Nxf5)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
116094489 (Nxf5)
05168 Herpes simplex virus 1 infection
116094489 (Nxf5)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116094489 (Nxf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116094489 (Nxf5)
03009 Ribosome biogenesis [BR:
mcoc03009
]
116094489 (Nxf5)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116094489 (Nxf5)
mRNA cycle factors
Stress granule specific factors
116094489 (Nxf5)
Ribosome biogenesis [BR:
mcoc03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
116094489 (Nxf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tap-RNA_bind
TAP_C
LRR_4
LRR_8
NTF2
Motif
Other DBs
NCBI-GeneID:
116094489
NCBI-ProteinID:
XP_031232083
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Position
X
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AA seq
602 aa
AA seq
DB search
MWSSPDESLEGRSPMIVLKNTNSEIHKQRYVLPYKRYEPYHHSEYKMNHNRGFQGKRRGA
NYIWNKFDRKNNHFDHSGAPYAMRMKGRRERYSYEDQYFLTVWDDRKTEEGETDLDGENG
TEERWYKVTIPSGRMYEKTWLMNSIKNLCSVPFIPVDFHYSKNRARFFVQNAETASALKD
VNYKICDETSRKITIFVTPSVVPYSVQNKFTSAQMEHIKKSMMNRYDASQKALDLEKFRF
DEGLMDKDIDMMLNRRSCMVATLQIIQSNIPELLSLNLKNNKLYQLDGLSDVIEKAPHVK
ILNLSYNKLKSIMELQKLKELKLEELWLEGNPFCNCFSNRSAYIRPPPPPPPPQPQPRKE
TCNESEHIKNLVLRFLKEYYLFYDSGDRFRLLDAYHDQACFSLSVPFNVNDPDLNNLEEY
FKYNRNIKKHQDSYKRMQLLKHTKHDIVNSLSLLPKTQHDLCSFLVDLCFQTEMMVCFSV
NGLFKEVEGKCQGCIRAFTRIFIAILSSDSRICIMNDELIVRNASPKEIQKAFTSLPAPD
TSFKPLLSEEQQEMVKSFSMQSGMKLDWSQKCLEDNEWDYTKAGEAFTALQNEGKIPKEF
FK
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtggtcctctccagatgaaagtctggaaggcaggtctcccatgattgttctgaagaat
actaattctgagatacataaacaaagatatgtcctaccgtacaagagatatgaaccatac
catcattcagaatacaaaatgaaccataaccgtggttttcaaggaaaaaggagaggtgcg
aattatatatggaataaatttgacaggaagaataatcattttgatcattctggtgctcca
tatgccatgagaatgaaagggaggagagaaagatacagttatgaagaccaatattttctt
actgtgtgggatgatagaaaaactgaagagggcgaaacggatctggatggtgaaaatgga
actgaggagagatggtacaaggtcacaattccaagtggaagaatgtatgagaagacgtgg
ctaatgaattcaatcaagaacctctgtagtgtgcccttcatccctgttgatttccattat
agcaaaaaccgggccaggttctttgttcagaatgctgagactgcctctgcactgaaggat
gtcaactacaagatttgtgatgaaacaagcagaaaaataaccatctttgtcaccccttct
gttgtaccctattccgtgcaaaacaagtttacatcagcacaaatggagcatataaagaaa
tctatgatgaaccggtatgatgcctcccagaaagctctagacctcgagaagttccgattt
gatgaaggcttaatggacaaggatattgacatgatgctgaatcgaagaagctgcatggtt
gccacactacagatcattcaaagcaatatccctgaactgttgtccttgaacttgaaaaac
aacaaattgtaccagctggatgggctgtctgacgtgatagagaaggcccctcacgttaag
attctgaacctctcctacaataaactgaagtcaatcatggaattgcagaagttgaaagaa
ctgaagctggaagagctgtggctagaagggaaccccttctgcaactgcttctcaaatcgt
tctgcatatataagaccaccaccaccaccaccaccaccacaaccacaaccacgcaaggaa
acctgtaatgaatctgaacacataaaaaatctagttctacgatttctgaaagaatactac
ttgttttatgacagtggagatcgatttcgtcttctcgatgcttaccatgaccaggcctgc
ttctccctgtcggttcctttcaatgtcaatgacccagacctgaacaacttggaagagtac
ttcaaatataacagaaatataaagaagcatcaagactcatacaagcgaatgcagttgctg
aagcacacaaagcatgacatcgtgaactctcttagcttgttacccaaaactcagcatgat
ctttgctctttcttggtggatttgtgtttccagacggaaatgatggtttgtttttctgtg
aatggactgttcaaggaagtggaaggaaaatgccaaggctgcatccgtgccttcacgagg
atcttcattgctatccttagcagcgattcaagaatttgtatcatgaatgatgagttgatt
gtgaggaatgccagtcccaaagagatacaaaaggccttcacttcattgcctgcacccgac
acttcattcaagcctttactctctgaagaacagcaggaaatggtgaagtctttctccatg
caatctggaatgaaacttgactggtctcagaagtgccttgaagataacgagtgggactac
accaaagctggagaggccttcactgccctccagaatgagggcaaaatcccaaaggaattc
ttcaaataa
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