Mastomys coucha (southern multimammate mouse): 116096020
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Entry
116096020 CDS
T07224
Symbol
Abca1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc02010
ABC transporters
mcoc04148
Efferocytosis
mcoc04975
Fat digestion and absorption
mcoc04979
Cholesterol metabolism
mcoc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116096020 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116096020 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
116096020 (Abca1)
04979 Cholesterol metabolism
116096020 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
116096020 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mcoc02000
]
116096020 (Abca1)
Transporters [BR:
mcoc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116096020 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
116096020
NCBI-ProteinID:
XP_031233272
LinkDB
All DBs
Position
Unknown
AA seq
2261 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDAQRLLLYSQKDT
SIKDMHKVLRMLQQIKHPDSNLKLQDFLMDNETFSGFLQHNLSLPRPTVDSLLQADVGLQ
KVFLQGYQLHLAGLCNGSKLEEIIQLGDAEVSALCGLPREKLDAVDRVLRYNMDILKPIV
TRLNSTSHLPTQYLAEATTALLDSLGGLAQELFSTKSWSDMRQEVMFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDMDTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWEELS
PQIWTFMEKSQEMDLVRTLLDSRGNDQFWEQTLDGLDWTAQDIMAFLAKNPEDVQSPNGS
VYTWREAFNETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTG
VTPGSAELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMVFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEEIDEKSHPGSSQKGVSEICMEEEPTHLRLGVS
IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRAFGDKQSCLHPFTEDDAVDPNDSDLDPESRETDLLSGMDGKGSYQLK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDMGTQELLNALTQDPGFGTRCMEGNPIPDTPCLVGEEDWTINP
VPQSIMDLFQNGNWTMKNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQKTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSQEVNDAIKQMKK
ILKLTKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNDIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKTKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTAVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQDFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagttaaggctgctgctatggaagaacctgacgtttcgaagaaga
caaacatgtcagctgctactggaagtggcctggcctctctttatcttcctgatcctgatc
tctgtccgcctgaactacccaccctacgaacaacacgagtgccactttccaaataaagcc
atgccgtctgcaggaaccctgccctgggtacaggggattatctgtaatgccaataacccc
tgcttccgttatccaactccaggagaggctcccggcgttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagacgctcagaggcttcttctgtacagccagaaagacacc
agcattaaggacatgcacaaggtcctgagaatgttacagcagatcaagcatcccgactca
aatttgaagctccaggatttcctgatggacaatgaaacattctctggattcctacagcac
aatttgtcccttccgaggcctactgtggacagtctgctgcaggcggatgtcggtctccag
aaggtatttttgcaaggctaccagttacatttggccggtctgtgtaatggatcaaaatta
gaagaaatcattcagctcggtgatgcggaggtttctgccctttgtggtctacctagggag
aagctagatgcagtggatcgagtgctgcgctacaacatggacatcctgaagccaatcgtg
acaagactaaactcgacatctcatctcccgactcagtatctggctgaagccaccacagcc
ttgctggacagcttagggggcctggcccaagagctgttcagcacaaagagctggagcgac
atgcggcaggaggtgatgtttctgaccaacgtgaacagctccagctcctccacccagata
taccaggctgtgtcccgcatcgtgtgtggtcacccggagggtgggggcctgaagatcaag
tccctcaactggtatgaggataacaactacaaagccctctttggagggaatggcaccgag
gaagacatggacaccttctatgacaattctacaactccttattgcaatgatttgatgaag
aacttggagtctagtcctctttctcgaattatttggaaggcactcaagccactgcttgtt
ggaaagattctctatacacctgacacaccagctacacggcaggtcatggctgaggtcaat
aagacctttcaggagttggctgtgttccatgacctggagggcatgtgggaagaactcagc
ccccaaatttggaccttcatggagaagagccaagagatggaccttgtccggacgctgtta
gacagcagaggcaatgaccagttctgggaacagacgttggatggattagattggactgcc
caagacatcatggcatttctggccaagaacccggaggatgtccagtccccaaatggctct
gtgtatacatggagagaagctttcaatgagaccaaccaggcaattcagacaatatctcga
ttcatggagtgtgtcaacttgaacaagctggagcccatcccgacagaagtcaggctcatc
aacaagtccatggaactgctggatgagaggaagttctgggctggtatcgtgttcacaggc
gttactcctggtagtgcggagctgccccatcatgtaaagtacaagatccggatggacatt
gacaacgttgagagaactaataagatcaaggatgggtactgggaccctggtccccgagct
gacccctttgaagatatgcgctatgtctggggcggcttcgcctacttgcaggatgtggtg
gaacaggccatcatcagagtgctgacaggaactgagaagaaaacgggtgtctatgtgcaa
cagatgccctacccctgttatgtggatgacatttttctgcgggtcatgagccgttcaatg
cccctcttcatgactctggcctggatctactctgtggctgtgatcatcaagggcattgtc
tatgagaaggaggctcgcttgaaggagaccatgcggatcatgggcctggacaatggcatc
ctctggtttagctggttcattagcagtctcatccccctgcttgtgagtgctggcctgctg
gtggtcatcctgaagttaggaaacctgctgccctatagtgaccccagcgtggtgttcgtc
ttcctgtccgtgtttgccgtagtgaccattctacagtgcttcctcattagcacactcttc
tctcgtgccaacctggcagcagcctgtgggggcatcatctacttcacactgtacctgccc
tatgtgctgtgtgtagcatggcaggactacgtgggcttctccatcaagatctttgctagc
ctgctgtctcctgtggcttttggattcggctgtgagtatttcgccctttttgaggagcaa
ggcattggggtccaatgggacaatctctttgagagcccggtggaggaggacggcttcaat
ctcaccactgcagtgtccatgatggtctttgacacctttctctatggtgtgatgacgtgg
tatatcgaagcggtctttccagggcagtatggaattcccaggccctggtattttccttgt
accaagtcctactggtttggggaggaaattgatgagaagagccaccctggttccagtcag
aagggagtttcagaaatctgcatggaagaggaacccactcatctgaggctgggggtatcc
attcagaacctggtgaaggtttaccgagatggcatgaaggttgctgtggatggcttggcg
ctaaatttttacgagggccagattacctccttcctgggccacaatggagcagggaagacc
accaccatgtcaatactgactgggttgtttcccccaacgtctggcactgcttacatcctg
gggaaggacattcgctctgagatgagctccatccggcagaacctgggggtctgtccccag
cataatgtgctgtttgacatgctgactgtcgaagagcacatctggttctatgcccgccta
aaggggctctcagagaagcatgtgaaagcagagatggagcagatggccctggatgttggc
ttaccccccagcaagctgaaaagcaaaacaagtcagctgtcaggtgggatgcagagaaag
ctgtctgtggccttggccttcgtgggtggatccaaggttgtcattctagatgagcccaca
gcaggtgttgacccgtactctcgaaggggaatatgggaactcctgctgaaataccggcaa
ggccgcaccattattttgtctacacaccacatggacgaagcagacatcctaggggataga
attgccattatttcccatgggaagctgtgttgtgtgggctcctccctgtttttgaaaaac
cagttgggaacgggttactacctgactctggtcaagaaagatgtggaatcgtccctcagt
tcctgcagaaacagtagcagcaccgtgtcttgtctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tctgctatctccaacctcatcaggaagcacgtgtctgaagcccggctggtggaggacatc
gggcatgaactgacctacgtgctgccatacgaagctgccaaggagggggccttcgtggaa
ctcttccatgagattgatgaccgactctcagacctgggcatctccagttacggcatctca
gagaccaccctagaagaaatattcctcaaagtggctgaggagagtggggtggacgccgag
acctcagatggtactttgccagcaagacggaacagacgggcctttggggacaagcagagc
tgtctgcacccatttacggaagacgatgctgttgatccgaatgattctgacttagaccca
gaatccagggagaccgacctgctcagtggcatggacggcaaaggctcctaccagctgaag
ggctggaaactcacccagcaacagtttgtggcccttttgtggaaaaggctgctgatcgcc
agacggagcaggaagggcttctttgcgcagattgtcctgccagccgtctttgtttgcatt
gccctggtcttcagcctgattgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtataacgagcagtatacatttgtcagtaatgatgctccggaggacatgggc
acccaggaactcctgaatgctctaacccaagatccaggcttcggaacccgttgtatggag
ggcaacccaatcccagacaccccatgcttggtcggggaggaggactggaccatcaaccca
gttccccagagcatcatggacctcttccagaatgggaactggaccatgaagaacccctca
cccgcatgccagtgtagcagtgacaaaatcaagaagatgctgcccgtgtgtcccccaggg
gcagggggcctgccgcctcctcagagaaaacagaaaaccgcagacatccttcagaatctg
accggaagaaacatttcagattacctggtgaagacatacgtgcagatcatagccaaaagc
ttaaagaataagatctgggtgaatgagtttcggtatggtgggttttccctgggtgtcagt
aattctcaagcacttcctccgagccaagaagttaatgatgccatcaagcaaatgaagaaa
atcctgaagctgaccaaggacagctctgcagaccgttttctcagcagcttgggaaggttc
atgacaggactggataccaaaaacaatgtcaaggtgtggttcaataacaagggctggcat
gctatcagttcgttcctgaatgtcatcaacaatgccattctccgggccaacctacagaag
ggagagaacccgagccagtatgggatcactgctttcaaccatcccttgaacctcactaag
cagcagctctcagaggtggctctgatgaccacctctgtcgatgtcctcgtgtctatctgt
gtcatctttgccatgtccttcgtcccagccagctttgttgtgttcctgatccaggagcgt
gtgagcaaagccaaacaccttcagttcatcagtggcgtgaagcccgtcatctactggctg
tccaattttgtctgggatatgtgcaattatgtggtccctgctacactggtcattatcatc
ttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcctgttctagccctt
ctgctcttgctgtatgggtggtcgatcactcctctcatgtacccagcatcctttgtgttc
aagatccccagcactgcctatgtggtcctcaccagtgtgaacctcttcatcggcatcaat
ggcagtgtggccacttttgttctggagctctttacaaacaataagctcaatgacatcaat
gacatcctgaagtctgtgtttcttatcttcccacatttttgcctggggcgagggctcatt
gacatggtgaaaaaccaggcaatggctgatgccctggagaggtttggggagaaccgcttc
gtctctccactctcttgggacttagtaggccggaacctttttgccatggccgtggaaggg
gtggtgttcttcctcattactgttctgatccagtacagatttttcatcaggcccagacct
gtaaagacgaagcttcctcctttgaatgatgaggatgaggacgtgaggcgggagagacag
aggattctggatggtggcggacagaatgacatcctagagatcaaggagctgaccaagatc
tacagaaggaagcggaagcctgcagttgacaggatctgcgttggcatccctcctggagag
tgctttggactcctgggagttaacggagctgggaagtcatcaactttcaagatgctgact
ggagataccgctgtgaccagaggggatgctttccttaacaaaaacagcatcttatcaaat
atccatgaagtacatcagaacatgggctactgccctcagtttgatgccatcacagagctg
ctgactggaagagagcatgtggagttctttgccctcttgaggggagtcccggaaaaggaa
gttggcaaggttggtgaatgggcaattcgcaaactgggcctggtaaagtatggagaaaaa
tatgccagtaactacagcggtggtaacaaacgaaagctttccacagccatggctttgatt
ggcgggcctcctgtggtgtttctggatgaaccaaccacaggcatggaccccaaagcccgg
agattcttgtggaattgtgccctaagcattgtcaaggaggggagatctgtagtgcttaca
tctcatagtatggaggaatgtgaagctctttgtacaaggatggccataatggtcaacggg
aggttcaggtgccttggcagtgtccagcatctgaaaaacaggtttggagatggttatacc
atagttgtacggatagcgggctccaaccctgacctgaagcctgtccaggacttctttgga
cttgcatttccaggaagtgtcctaaaagagaaacatcgaaacatgctgcagtaccagctt
ccatcctccttgtcatctctggccaggatattcagcatcctttcccagagcaaaaagcga
ctccacatagaagactactctgtctcccagacaacacttgaccaagtatttgtgaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcactacacaaaaaccagaca
gttgtggatgtggccgttctcacatcctttttgcaggacgagaaagtgaaagaaagttac
gtgtga
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integrated database retrieval system
