Mastomys coucha (southern multimammate mouse): 116096082
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Entry
116096082 CDS
T07224
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116096082 (Shoc1)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116096082 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
116096082
NCBI-ProteinID:
XP_031233389
LinkDB
All DBs
Position
Unknown
AA seq
1484 aa
AA seq
DB search
MALNGRTMFSAFKYYAIDYLHENTVKERLYRDALLLQIPSCLNQNKKIIDDKYRSPWTGA
SAIPVPGMTDNSVLEQWRTRFCVENVLEKRTVTGMMINGRFEEIVPSSNPNSPPGIENDK
SFPSKDYIDDFIPVKCSLYFPGVKVEHQGLLIDEEMIFRSKTMDNHLPTVDSLLRRLKLY
LVKDPFLDFKAELSREDNFTECLSDQERLEPFVRDFHMAEETFCKEKLPPVFPSGFKSLK
STNLKQEILILLPSKLKDPLNSIPKIMDSVDESERFKRDLTSKHEFDTEDIKCNSTENLT
LASLCEPEYSEPGDLEMPPTHLSLPRQHSSVSSLYARFQTFPFSAACKISLLSAGESANK
YCMLWQLGGCRNSWVSFLLTVPRFQEPNSQYSLADMRNIFSIKGDSLVIDPAKAKGWRQA
RLNPVMAETLEHLKAYLCHNGLSSQETKLEIFLPTKVLQLESWLERKSRPSPILPISEKS
ADDYHLHPQKRPIPSSEKEVPCLCLSGESVSVKKLKIEANPNNDQEPAARIMQETETSCD
GVGDPVPSPESASSSQIKASYDKKQDDLDLLSEFIILRSKHQTFPSEVDVKSHDHDQNNE
FQDKEKYSLTLQEESPVVSNNKAPEEKCQERTDDVTEIPASDTQCQAYCLLEGTAIPILE
KLVCLCTYPAANWKFATVNFDQTRFFLKEQEKIINDAIHQDKSGDRKMTFKHAALLHLLV
TIRDVLLTCNLDTALGYLSNAKDIYKSVLDSCLDNIWRQLKILQFIKERRPKTNYKIQEL
QCQILSRLRSQQQMKVLIIVRMDSGGEKHLLIKTLKKIEGLTLTVLRSNERKDFLETTSV
LKGTHACVVVHNHSIRANFPWSSFSLVVEYNYVGHSCWAEHCQQLDIPFLAFKVAVPDTA
LQRNALLDRFGGFLLKVPIPYVFFASEGLLHTPEILRLLESNYNITLVERCCCGSLKLFG
STECYVVVTIDEHTAVVVQDLEELHHEKASDNIIMRLMALSFQYSCCWIILYSKKTLNSQ
YHLTEKTLHHLAQIYAALVSSGLKSEELDVKLIIAPGVEETALVIRQIADHSLMTSKRDP
HEWLDKSWVEVSPSKEEMNLLDFPCINPLVAQLMLHRAPSLHWLLIATPAELQELLPQVP
GKVLKHFCSITSLFKISSPSMTKPSQISSLPEDMNQTDLFISQSSAPIIQEREEYYSYED
SEETVLKGTSSSPVELRETPCMWPCVAPHSQRSSWEGPSCGPDTVQNNPFLMNAESKEVT
WPSFPSWSDSESDVFSLGLTQVSCEPVMPLTDSQRRGTHDFVNFPEAKGTRNMQVSTPVF
LPENSQPHLHWDFKKNSCSKQIYSFNPSCGAEQTTYNKWYSQKDDFSSNQPESLWDEVEG
STYRNANAETKETFWRELPAVPSWDSFCASDSNVNQKGFKGLNFCQRAGNYLGQRRLPVS
SSNWEDYKTPTDLMYSQVPQPKKRRLMYERVPGRVDGQTRLRFL
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atggcattgaatggaagaactatgttttcagccttcaaatattacgcaatagactattta
catgagaacacagttaaagagaggctttacagagacgctttattgcttcagatcccttca
tgtttaaatcaaaataaaaaaattattgatgataaatataggagtccatggacaggagcc
tcagctattccagttccaggaatgacagataattcagtcttggagcagtggagaacaagg
ttctgtgtggagaatgttcttgagaaaagaacagttacaggaatgatgattaatggcaga
tttgaggaaattgttccaagttccaatccaaactctccacctggaatagagaatgataag
tcgttccccagtaaggactacatagatgactttattcctgtcaagtgctccctgtacttc
ccaggtgtgaaagtggaacaccaaggattacttattgatgaggaaatgatttttaggagt
aaaacaatggacaatcatctaccgactgtggatagtctcttgagaagactaaagctctat
ctggtgaaggatccgtttttagatttcaaggcagagctctcgcgagaggataatttcacg
gagtgtctctctgatcaagaacgtttggaaccttttgtaagagatttccatatggccgag
gagaccttttgtaaggagaaactaccaccagtttttccttctgggtttaaatccttgaaa
tctacaaatctcaaacaagaaattctaattctactaccatcaaaactgaaggacccatta
aactcgataccgaaaataatggactctgtagatgaaagtgaacgtttcaaaagagatctt
acttccaagcatgaatttgatactgaggatataaaatgcaactccacagagaacttaact
cttgcaagcctttgtgaaccagagtacagtgagccaggagacctagaaatgccaccaact
catctaagtttaccaaggcaacattcttcagtgagttcattatatgcaagatttcagaca
tttccattttctgctgcgtgtaaaattagtttgcttagcgctggagaatcagctaataaa
tattgtatgctgtggcaactgggaggctgcaggaactcttgggtctcgttcttgcttaca
gttccaagatttcaagaacccaacagtcagtattcacttgcagatatgagaaacatcttt
tctatcaaaggagacagccttgtgattgaccctgcaaaagcaaagggatggagacaagca
agactaaatccagtgatggcagaaacgttggagcatctgaaggcctatttgtgtcataat
ggtctgtcttctcaggagactaagctggagatctttctgcctaccaaagtacttcagctg
gagtcctggctagaacgtaagagtcgtccctcacccattctgccaatcagtgagaaatct
gcagatgattaccatttacatccacagaagagacccataccctcttcagaaaaggaagtg
ccatgcctttgtttgtctggtgaaagtgtctctgttaaaaaattaaaaatagaagcaaat
ccaaacaatgaccaagaaccagctgctagaataatgcaggagactgagaccagctgtgat
ggagttggtgatcctgtgccctctcctgaatcagcttcctcttcgcagatcaaggcatct
tatgataaaaaacaagatgatttggaccttttgagtgaatttattattctgagaagtaaa
caccagactttcccttcagaagttgacgtcaaaagccatgaccatgaccaaaacaatgaa
tttcaagataaagaaaaatattctttgactcttcaagaagaaagtcctgttgtttctaat
aataaagctccagaggaaaaatgtcaagaaagaacagatgatgtcactgagatccccgca
tcagatacgcagtgccaagcatactgtctcctagaaggcacagcgattcctatcttagag
aagcttgtttgcctctgtacttaccctgctgctaattggaaattcgccaccgtcaatttt
gaccaaacaagattcttcttaaaggaacaagaaaagataataaatgatgctattcaccaa
gataaaagtggtgacagaaaaatgactttcaagcatgctgctctcttacatctcctggta
acaattagagacgtccttttaacatgcaacttggataccgcattaggatatttgtcaaat
gcaaaagatatctacaaaagtgtgttagactcctgcttggataacatttggagacagctg
aaaattttacagtttattaaggaaagaaggcctaaaaccaactataagatccaagaactg
caatgccagatactaagtaggctacggagtcaacaacaaatgaaggtactgattatagta
agaatggactcaggtggagaaaagcatttgcttattaagacccttaagaaaatagaaggt
ttaacattgactgttttacgttcaaatgagagaaaagactttctggaaactaccagtgtt
ttaaaaggtacacatgcctgtgtggttgtgcacaaccacagcatcagagcgaatttcccc
tggagcagcttctcgctcgtggtggagtacaactatgtggggcactcttgctgggccgag
cactgccaacagttggatatacctttcctggcctttaaagtcgctgttccagacacagct
ctgcagagaaacgccttgctggatcgatttggtgggtttctcttgaaagttccgattcca
tatgtattttttgcatctgaaggacttcttcatactccagaaatactccggctgctggag
tctaactataatatcacactggtggagagatgctgctgcgggtcactgaaactctttgga
agtacagagtgttatgtagtggtgacaatcgacgagcatactgctgtagttgtgcaggac
ctagaagaattacatcatgagaaggcatcagacaatatcattatgagattaatggcactg
tcgttccagtatagctgttgttggataatattgtattccaagaaaacactaaattcacag
taccatcttacggaaaagacacttcatcacctcgcacagatttatgcagctttggtttcc
tcaggccttaaatctgaagaactggatgtaaagcttataattgcccctggagtagaagag
actgctttagttattcgacaaattgcagaccacagtttaatgacgtcaaagagagatcct
catgaatggttggataaatcctgggtggaagtttcaccttctaaggaggaaatgaaccta
cttgattttccatgtattaacccactggtggctcagctcatgttacatagagcaccttcc
ctgcactggctcctgatagcaactcctgctgagcttcaggaactcctaccccaggttcca
ggcaaagtactgaagcatttttgtagcatcacttccttgttcaagattagttctccctcc
atgacaaagccttctcagatttcatcacttccggaagatatgaatcaaactgatctcttt
atttctcagagttcagctcctatcattcaagaacgggaagaatattattcctatgaagat
tcagaagagaccgtactgaaaggcacaagctcttctcctgtggagctaagagaaacgcca
tgcatgtggccatgtgtagcaccacacagtcagaggagcagctgggagggtcccagctgt
ggccctgacacagtgcagaataaccctttcctaatgaatgcagaatcaaaggaagtcacc
tggccctcctttcccagctggagtgattcagagtcagatgtcttttctctgggtctaaca
caagtaagttgtgaacccgtaatgccactaactgattctcagaggagaggcactcatgat
tttgtaaattttcctgaagcaaaaggaaccagaaacatgcaagtgtccacccctgtcttt
ttaccagagaactcccaaccccaccttcactgggacttcaagaaaaacagttgtagtaaa
cagatttattcgtttaatccaagctgtggagcagaacagactacctacaacaaatggtac
tctcaaaaagatgacttctccagtaatcagccagagagcctgtgggacgaggtggaaggc
agcacatacagaaatgcaaatgctgagacaaaggagaccttttggagagaactgccagct
gttccaagttgggattcattctgtgcttctgattctaatgtaaatcaaaaaggattcaag
ggccttaatttctgccaaagagctggaaactacttaggacagagaaggctccctgtatct
tcatctaattgggaagattacaaaacaccaacagacttaatgtactcacaagtaccacaa
cccaagaaacgacgtctaatgtatgagagagtccctggaagagtggatgggcaaacccgg
ctgaggtttttatga
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integrated database retrieval system
