KEGG   Mastomys coucha (southern multimammate mouse): 116096099
Entry
116096099         CDS       T07224                                 
Symbol
Prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116096099 (Prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mcoc03041]
    116096099 (Prpf4)
Spliceosome [BR:mcoc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    116096099 (Prpf4)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 PRP4 Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT140_1st WD40_like Ge1_WD40 Beta-prop_WDR35_TULP_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 116096099
NCBI-ProteinID: XP_031233427
LinkDB
Position
Unknown
AA seq 521 aa
MASSRASSTTTKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
NSKMLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA
DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq 1566 nt   +upstreamnt  +downstreamnt
atggcctcctcacgagcctcctccacgacaaccaaaaccaaagcgcctgacgatttagtt
gctcctgttgtgaaaaaaccacacatctactatggaagcttggaagagaaagagcgggaa
cgcctggccaaaggagagtctgggattttgggaaaagaaggactcaaagccggcattgaa
gcagggaatattaatataacatccggagaagtatttgaaattgaggagcacatcagtgag
cggcaggcagaagtcttggcagagtttgaaagaagaaagcgagcccggcagattaatgtt
tccacagatgactcagaggtcaaggcttgccttagagccttgggagaacctatcacactt
tttggagagggccctgctgaacgaagagaaaggttaagaaatattctctcagtggtcggg
actgatgccttaaaaaagaccaaaaaagatgatgaaaaatctaagaagtcaaaagaagag
tatcagcaaacctggtaccatgaaggaccaaatagcctgaaggtggccagactgtggatt
gctaattattcgctccccagggcaatgaaacgcttggaggaggcccgtctccataaggag
attcctgagacaaccagaacctcccagatgcaggagctgcacaagtctctccggtctttg
aataatttctgcagtcagattggagatgatcggccgatctcctactgtcatttcagcccc
aattctaaaatgctagccacagcttgttggagtgggctctgcaagctctggtctgtccct
gactgcagcctccttcacactcttcgaggccataacacaaatgtaggagcaattgtattc
catcccaaatccactgtctcattggaccaaaaagatgtcaacctggcgtcttgtgctgct
gatggttctgtgaagctttggagtcttgacagcgatgaaccagtggcagatattgaaggc
catacagtgcgtgtggctcgggtaatgtggcatccgtcagggcgtttccttggcacaacc
tgttatgaccgttcatggcgcttatgggatttagaggctcaagaggagatcctgcaccag
gaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttggctggc
actgggggactggatgcctttggccgagtttgggacctacgcacaggacgctgcattatg
ttcctagaaggccacctgaaggaaatctacgggataaatttctcccccaatggctaccac
attgccactggcagtggtgacaacacctgcaaagtgtgggaccttcgacagcgacgctgt
gtctacaccatccctgcccatcagaacttagtgaccggtgtcaagtttgagcctatccat
ggggacttcttgctcacgggtgcctatgacaacacagccaagatttggacccacccaggc
tggtccccactgaagactctagctggtcatgagggcaaagtgatgggcctggacatttct
tctgatgggcaactcatagccacttgttcctatgacagaaccttcaagctctggatggca
gagtag

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