Mastomys coucha (southern multimammate mouse): 116096184
Help
Entry
116096184 CDS
T07224
Symbol
Frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116096184 (Frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
mcoc04091
]
116096184 (Frem1)
Lectins [BR:
mcoc04091
]
C-Type lectins
Lecticans
116096184 (Frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
116096184
NCBI-ProteinID:
XP_031233614
LinkDB
All DBs
Position
Unknown
AA seq
2173 aa
AA seq
DB search
MHSPGCTGPKALSFLLLQLLLWHLEPASATFISINRGLRVMKGSSAFLSEDHLRFAIPKE
KDACRVEVVMNEPITQRVGKLTPQVFDCHFLPNEVKYVHNGCPILDEDSVKLRLYRFTET
DTFMETFLLRVHLVEPDCNIIRVSSNVLEVNEFYGLSQAIDKNLLQFDYDRTSSLDCTIR
LNPVRTQLPAHGKLVVVNRKSEGPRGDQPHSFFSETELGAGLKCPDGSCALELKQVASLK
VSCEEFLLTGFHYQHMQPPSPNIDYIPIQLELTDRRSKTVYKSESVWLPVYIRVGIPNQA
PRAAFMAMFVLEVDQFILTPLTTSVLDCEEDETPKPLLVFNITKAPLQGYVTHLLDHTRP
ISSFTWKDLRDMQVAYQPPNSSHPERRHYKMELEVYDFFFERSTPITVHISIRTADTNAP
RVSWNIGLNLLEGQSRAITWEQFQIVDNDDIDAVQLVTIGGLQHGRLTVREGKGFLFTVA
DLQAGVVRYHHDDSDTTKDFVAFRIFDGRHSSHHKFPINILPKDDSPPFLITNVVIELEE
GKAILIQGSMLRASDMDSSDDYIFFNITKSPQAGEIMKQPGPRLTGYPVPGFLQRDLFNG
IIYYRHFGGEIFEDSFEFVLWDSHEPPNLSVPQVVTIHITPVDDQLPKEAPGISRHLVVK
ETEVAYITKKHLHFLDTESQDGELIYTVTRPPCFSFSHRYLDAGKLFMVDSIPKLTKNPT
APGLSSFTQHAVNHMKVAYMPPMQDIGPTPRHVQFTVSVSNQHGGTLHGICFNVTILPVD
NQVPEVFTNTLRVAEGGQCTISTEHILVSDSDTPLDSICLSLQEMPLHGGVELDGFPLNP
RGTFSWQDLHNLKVRYQHDGSEVFQDEIFLEVTDGTNSAEFVLHIEVFPVNDEPPVLKTD
LIPMMHCSEGGEVTITPEYIFATDADNDDLELLFLIARGPQHGVVRKAGLHVDRFSQGDV
ISGTVTYKHTGGEIGLEPCSDTVVLVVSDGEADPLVNGCCYGRLDSSVPLHKSFPTYQLN
ITVHPVNNQPPSIIIGRMFTVDEGCSASLTTHHLTITDRDTAPDDLEFILASHPQFGYLE
NTLPSAGFEKSNMGISIASFQWTDMQAAHINYVQSRHLGVEPTADQFTVYATDGKQRSLE
TTFHVIINPINDEAPDLVVQNITVDEGHMIELDASIISATDRDVPKDPLLFSIAHKPQHG
LLINAAVSKDSHQIKQLEHEIHNFSADLLKNGMKLAYAHDGSESSADNFVIQLSDGKHKI
LKTISVNITPVNDERPTLSKKAEISMTVGDTRVLSSAVLSAIDKDSPREKIHYLFERLPQ
NGQLQLKIGRDWVPLSAGMQCTQEDVDLNLLRYTHTGKMDSQNGDSFTFSLWDEANRSPA
FDCHIIIEDTGKGDIVIHVKPLVVAKGGRGLLTTASLMAVDGADKPEDFLYLITSPPQYG
QVEYIHSPGVPITSFSQMDIAEQTICYIHKSRTAVPSDSFRFTISNGLQTQHGVFEITLQ
TVDRALPVLTKNKRLRLAEGAMSLLSADHLQLTDPDTPPENLTFFLAQLPRHGYLYLRGK
VLQHNFTQRDVDSRGVAYQHSGDGAQEDCFTFLATDRKNQGFVVDGKVQKEPVRFTIQVD
QLDKAAPRITHLHSPSQVGLLKNGCYGIYITSHVLKASDPDTEDDQIIFKILRGPLHGRL
ENTTTGEFIHERFSQKDLSHKTILYIINPSLQVNSDILEFQAMDPTGNTATPRSLELKWS
YIEWSQTEYEVCENVGILPLQVTRRGYSMDSAFVGVEVNQVSAIVGKDFTVTPSKLLQFD
PGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTQTKAAVKILDSKGGRCHPSNSF
NQSKHSTWGKGLWHPLPSGSSSLTTSGSPPLERRPPPSFTKGDALQGFGLTDLSQRKMTT
QGNGKSVLPSSVCRNGTDTIYNYHGIVSLKLEGDRISAHKRKAKLSIVSQPRRTIKVAEL
PLADKVESTADSHLFRQGLWPLFPKNCSVELKGLLHFEESTHRLYQCDGISWKAWSPQTK
GLEDRSCPAGWLLHSGYCHILVTRQKGTWTTATRACREQHHGDLVTVFSRSHMQWLWAIS
GRKPFWIGLKNQVRTGHWEWIGGEPVAFTNWRRGPPLHPKHGKNCVLVQKRGQWQSKNCS
KGKAHNFVCSRKL
NT seq
6522 nt
NT seq
+upstream
nt +downstream
nt
atgcactctccaggctgcactgggcccaaggctctgtcgttcttgctgctccagctgctt
ctgtggcacctggaaccagccagtgccaccttcatcagcatcaaccggggcctgagggtg
atgaagggtagttctgccttcctgtctgaagatcacctgaggtttgccatccctaaagag
aaggatgcctgcagagtggaggtggtgatgaatgagcccataacccagagggttgggaaa
ctcactccacaggtctttgattgccattttcttcccaatgaagtaaagtatgttcacaat
ggatgcccaattctggacgaagactctgtgaagcttaggctttacaggtttactgaaaca
gacaccttcatggaaacctttctcttgcgggtccatctcgtggagccagactgtaacatc
atccgtgtgagcagcaatgtgttggaagtgaatgaattctatggcttatcccaagccatt
gataagaacctgctccaatttgattatgataggacatccagtctggactgcaccatcaga
ctaaacccagtgaggactcagctgccagcccacggcaagctggttgtggtgaaccgtaag
tcagagggacctcgtggagatcagccacacagctttttctctgagacagagctaggggca
ggactgaagtgtccggatggaagttgtgccctggaattgaagcaagtggcaagtctgaaa
gtgagctgtgaggagttcctgctgacggggtttcactaccaacacatgcagcccccttca
cccaacattgattacatccccattcagctggagctcacagacagaaggagtaaaactgtc
tacaagtcagagagtgtgtggctgcctgtctatatcagagttggcattcctaaccaggcc
ccaagggctgcgttcatggccatgtttgttctggaggtggaccagttcatactgacccct
ctgaccacctccgttctggactgtgaggaggatgagactccgaaacccttgttggtgttt
aacatcactaaagccccactccagggctatgtgacccacctgctggatcacaccagaccc
atctcttcatttacctggaaggatctcagagacatgcaagttgcctaccagccaccaaac
agcagccaccctgagaggagacattacaagatggagttggaggtgtacgacttcttcttt
gagaggagcacccccatcactgtccacatctccatcagaacagcagacacaaacgcaccc
cgggtgtcctggaatataggtttgaatctcctggaggggcagtctcgggccatcacttgg
gaacagtttcagattgttgacaatgatgacattgatgctgtgcagttggtcaccattggt
ggcctacagcatggacggcttacagtaagagaagggaaaggatttctcttcaccgtggct
gaccttcaggctggagttgttcggtatcatcatgatgacagtgacaccaccaaagacttt
gtggccttcaggatattcgatggccgacacagcagccatcacaagtttcctatcaacatc
ttgcctaaagatgacagccctccattcctcataaccaatgttgtgattgaactagaagaa
gggaaggccatcttgatccaagggtccatgctgagagcttcagacatggactccagtgat
gactatatcttctttaatatcacaaagtccccacaggctggggagatcatgaagcagcca
ggcccaagactgacaggctatcctgtccccggcttccttcagagagacctgttcaatgga
atcatttactaccgtcacttcggtggagaaatctttgaagattcttttgaatttgtccta
tgggacagccatgaacctccaaatctctcagtgccacaggtggtgacgatccatatcact
ccagtagatgatcagcttcccaaggaagctcctggcatttcccgtcatttggttgtcaag
gaaacggaggtggcctacatcactaaaaaacacctacatttcctagacacggaatctcaa
gacggagaactcatctatacagtaacacgtcctccatgtttctccttcagccacagatac
ttggatgctgggaagctattcatggtggacagcataccaaagctaaccaaaaatcctaca
gccccagggctaagctcatttactcagcatgccgtgaaccatatgaaagtggcctacatg
ccacccatgcaagatataggtcccacacctcgacacgtgcagttcacagtgtccgtcagc
aaccagcacggaggtactttgcacggaatctgcttcaatgtcacaattctcccggtggac
aatcaggttcccgaggtattcaccaacaccctgagagtggctgagggcggtcaatgcacc
atcagcacggagcacatcttagtttctgattcggacaccccactggacagcatctgcctt
tctcttcaggagatgcctctgcatggcggggtagagctggatggatttcctctaaaccca
agaggcacattttcttggcaagacctccataacttaaaagttaggtatcaacatgatgga
tccgaggtttttcaggatgagatattcttggaggtcacagatggcacaaattcagcagaa
tttgttctccacatcgaggtattccctgtgaatgatgagccacctgttctgaagactgac
ctcatccccatgatgcactgctcagagggtggagaggtgaccatcacccctgaatacatt
tttgctactgatgcagacaatgatgacttggaactgctgtttctgattgcccgagggcct
cagcatggagtggtgagaaaggctggactccatgtggacagattctctcagggagatgtc
atttcagggactgtgacatacaaacatacaggtggtgagattggcctcgaaccttgttct
gacactgtcgtgttggtggtttcggatggtgaagccgaccctttggtgaatggctgttgc
tacggtagacttgattcatctgttcctcttcataagtcctttcccacgtaccagctcaat
atcacggtgcatccagtcaacaaccagccaccttcaattataataggtaggatgttcaca
gtggacgaaggctgctcagcatcccttactactcatcacttgactatcactgaccgggac
actgccccagatgacttagaattcattttggcttctcatccccagttcggctacctagaa
aacacactgccttctgcaggctttgagaaaagtaatatgggcataagcatagcttcattc
cagtggacagacatgcaagctgctcacattaactatgtgcagtccaggcacctgggagtg
gaaccaactgctgaccagttcacagtatatgccacagatgggaagcaacgctccttggag
acaacatttcatgttatcatcaaccccataaacgatgaagctcctgaccttgtggtacag
aatatcactgtggatgaaggtcacatgatagaactggatgcttccatcatcagtgccact
gatagggatgttcccaaggaccccttgctctttagcatcgctcacaagccccagcacggc
ctcctcatcaatgcggccgtcagcaaggactctcatcagatcaagcagctggaacatgaa
atccacaacttctcagcagaccttctcaagaatggaatgaagctggcctatgcccacgac
ggctcagagagctctgctgataacttcgtgatccagctgtcagatgggaagcataaaatc
cttaaaaccatctcagtaaacatcacaccagtgaatgatgagagaccaacgctaagcaag
aaggctgaaatctcaatgactgtgggtgatactagagttctgtctagtgctgttctttca
gccatagataaagactcaccaagggagaagattcactatttatttgaaagacttccccaa
aatgggcaacttcagcttaagatagggagggactgggtccctctctccgctggcatgcag
tgcacccaggaggatgtggacctgaacttgctaagatacacgcacactggtaaaatggat
tcccagaatggagacagcttcaccttctccctctgggatgaggccaacaggtcacctgca
tttgactgtcacatcatcattgaagacacgggcaaaggtgatattgtcattcatgtgaaa
ccactcgtggtagccaaaggtggcagaggtctcttgacgaccgcctctcttatggctgtg
gacggagcagacaagcctgaggactttctctacctcatcacttccccaccacagtatggc
caagtggagtacatccactctcctggagtccccattaccagctttagccaaatggacata
gcagaacagacaatctgctacatacacaagagtaggacagccgtccccagtgacagcttc
agatttaccatcagcaatggactgcagacccagcatggggtgtttgagatcacgctgcag
actgtggaccgtgccttgcctgtgctgaccaagaacaaaaggctgaggctagctgaaggg
gccatgagcctactgtctgctgatcaccttcagctgactgaccccgacacacctccagag
aatctaaccttctttctggcccagctcccacgtcatgggtacctctacctgagagggaaa
gtactccaacataatttcacccagcgagatgtggacagcaggggtgtggcctaccagcac
tcaggagacggtgcccaggaggactgctttaccttcctagccacagacaggaagaaccaa
ggctttgttgtggatggaaaagttcagaaagagcctgttcgcttcactatccaggtggac
cagctggacaaggcagcaccccgcatcacacacttgcactccccttctcaagtggggctc
ttgaaaaatggctgctatgggatttacataacttcccatgtgctgaaggcgtcggaccct
gacacagaggatgaccagatcatctttaagattttacgaggcccattgcacggacgtctg
gagaacacaacaacgggtgaattcatccatgagcgatttagccagaaggacttaagccat
aagaccatcctttatatcataaacccttccttgcaagtgaattcagatatcctggaattt
caggccatggaccccacaggaaacactgccactccccggagcttggagctgaaatggtcg
tatattgagtggtcccagactgaatatgaggtctgtgagaatgtgggcatattgcccttg
caagttaccagaaggggatattccatggactcagcctttgtgggtgtagaggttaaccaa
gtgtcagctatagttggaaaagattttactgtcactccatccaaactgcttcaatttgac
ccaggaatgtcaactaagatgtggaatatagcaattacctatgacggattagaggaagat
gatgaggtctttgaagtaattctgaactcccctgtgaatgcggttcttggcacacagaca
aaagcagcagtgaaaattttggactcaaaaggaggacggtgccatccttcaaattccttc
aaccaaagcaagcacagcacgtgggggaagggcctttggcatccgctgccctcaggctca
tcctcactcaccacttcgggttctcctcctctggaaagaaggcctcctccatcttttacc
aaaggagatgctcttcagggttttggtctcacagacctctctcaaaggaagatgacgacc
caggggaatggcaaatcagttctcccatcctctgtttgtagaaatggaacagacaccatc
tacaattatcatggtatagtttccttgaaactagagggtgacagaatctcagctcacaaa
cggaaggccaaactatctattgtcagtcagccacggaggacaatcaaggtggcagagctg
ccgctagctgataaggtggaatccacagctgactcgcaccttttcagacagggtctgtgg
cccttgtttccaaagaactgttctgtggaattaaagggactccttcattttgaagaaagc
acccacagattgtatcaatgtgatgggatctcctggaaagcctggagcccccaaaccaag
gggctggaggatagatcctgcccagctggatggctccttcattcgggctactgtcacatc
ttggtcacaaggcagaaaggcacctggaccacagctacccgagcttgcagagaacagcac
cacggcgaccttgtgaccgtcttctccaggagtcatatgcagtggctatgggcaatcagt
ggaagaaagcccttctggataggcttgaagaatcaagtgcgaactggccactgggagtgg
atcggaggtgaacctgttgctttcaccaactggaggagagggccccctctgcacccgaaa
catggaaagaactgcgttttggttcagaaaagggggcaatggcagtcaaagaactgtagc
aaaggcaaggctcacaattttgtgtgctcaaggaaactctga
DBGET
integrated database retrieval system
