Mastomys coucha (southern multimammate mouse): 116096216
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Entry
116096216 CDS
T07224
Symbol
Focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116096216 (Focad)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116096216 (Focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
116096216
NCBI-ProteinID:
XP_031233684
LinkDB
All DBs
Position
Unknown
AA seq
1801 aa
AA seq
DB search
MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQSTNQTAALNLLWEKCCSDHV
VVRTACSEGLVALVAQGHAEFSYVLNGILNLIPSARNMSGLIKALMKLLQMQALREGQSG
EKDIRDIYSIRNPPQPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEASCVQIMAPFLWY
LYCEPFQLQEYAELRLSLLKVLLQPRGVYEEAQPSVLEQHILQLCCNMVPCLQIIDLKQT
TEVVLFMEDVCLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIQLLERSFELL
GEDFPVKLVIIGIALILLQTPASQQKPLLNLALKLLSHTEGQKIPKASLLLLVPLLQILS
STALEDCLAMGEDAPSRQQLALSLLEVLQREHYVDDCHKISCRLAFPVSSMYGSIFTAWR
ILEVIGEESAASAWLATVESLIPATTVIPPHVFLLLVHLLVEDEGQNLQQILRVTTQLAQ
ADSSQVPNLIPVLMFKLGRPLDPVSYNHILYTLPTLGVHKVCIGQILRVIQLLGTTPRLR
AVTLRLLTSLWEKQDRVYPELQRFMAMSDAPSLSEGKELQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDMR
PLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKDPVVASAAYKSLSHFSAG
EHTILHLPEKIRPEMPVPDELDEDESVDLSIPGSCYLRLLTITAPSVLPALEEFFTSLVR
QEMANMPRGIYHSALKGGIRSDQGKTVAGIPNFILKTYETNKQPGLKPGLAGGMLFCYDV
AMYQSKDGKPLNRLMASRGRSFKQTTLALLHEVHVQLSEWHHAIFLPHAWLAYMTRAYHA
ILQGRIAELELQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPVVKGNALLA
LSSLAVVVSKHEASLSSDSDGVMEVQPNFLPVKEWVSMVLNTLLVIVDSHYHPKGQLFTC
FYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQ
AVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALESCCFDPSLEYNTGCILGV
GLALSLMSHSSHLESRVHVAASLRKLSTYLDESGSQSRTFQEVLAYTLSCVCTSAFSAGI
IEATEAEDIMNKLQLLVENNQQTSGFALALGNLVYGLSECGHGKAEDLGNRLRPSWIKVV
LTEGAPTMLCLAALHGLVALVGSDVEVMQLKSEAIQNTHFQARLNEVIRTLTEVISLSGV
IGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVP
PSLLKVVMKPIATIGESYQYPPANLAALLSPLMRLNFGEDIQQLCLEIAVTQAPSSQSAA
ALLGLWVMPPLIHGLSLNIKKYLLVSMPLWAKHVSDEQIQGFVENLMVAVFKADSQPCHP
EMCPSALQGLSQAMKLPSPSHHLWSLLCDTTGRIFDLLPNRIRRNELEMYISIAKCLSEM
TDEGANQVFQITKDNIEKAAFVKLYLVSQGRLPLMSLTDLLTAAAQHPEKETLAWMILHS
LYQARIVNHANTGVLKRLEWLLELMGYIRNIAYQSASTENVAPDEALDFLMLIFAAAVVA
WADHEAPLLLGLSASWLPWHQENSPSGQQQPTAALLGRSLMHRVTVQEVLTQLPSSMLLL
LQKDPWRKQTQKFIDWLFNIMEIPNEAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYG
W
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaagaaaaggtttgattttccgaattctcttatccagtcacaggct
gtaggtcatcttattgctgctgtcttaaaagaacacggtgtttcagaaaagatacaccaa
tccacaaaccagactgctgccttgaacttgctgtgggagaagtgctgcagtgaccatgtg
gttgtgcgaacagcctgcagtgagggactggtggcacttgtcgctcagggtcacgcagag
ttcagctatgttctcaatgggatactcaacctcattccttctgccaggaatatgtctggt
ttgataaaagcccttatgaaattattgcagatgcaagcattgagggaaggacaaagtggg
gaaaaggacattcgggatatatattccatcagaaatcctcctcagcctttgatcaccgtg
cttgagcacaggcctgactgctggccactactcctgcagcagctgacagcttttttccag
caatgccctgaaaggtcagaagcttcctgtgttcaaataatggcaccattcctatggtat
ctctactgtgaaccattccagttacaagaatatgctgaacttcgactgtccctgctcaaa
gtcttacttcagcccagaggtgtttatgaggaagcacagccgtcagtattggagcagcac
atccttcagctgtgttgtaacatggttccatgcttgcagatcatagatctgaagcagaca
acagaggtggtactgttcatggaggatgtatgcctaagccttctgcgccatcctgtcttc
tggaaaagtcagcttacccagctgactcttcagctgctgtgcatctgtgaagtcagctta
aagataactggggaatgctcatctttaattcaacttttagagcgcagttttgaacttctt
ggggaggattttcctgtcaaattggtcattattggaattgctttaatacttctacagact
ccagcaagtcaacagaagccactattaaacctagctttgaagctcctctcacatactgag
ggtcagaaaatcccaaaggcgtccctgctgctcctggtgcctcttctgcagatactgtct
tccactgccctggaagactgtctggccatgggtgaggatgccccttccaggcagcagcta
gctcttagtctcctggaagtgctgcagagagagcattatgtagacgactgccacaagatc
tcctgcaggcttgcttttcctgtaagcagcatgtatggctcaatcttcacagcctggagg
attcttgaagtcattggagaagagtctgcagctagtgcctggctggctacagtggagtcc
ttgatccctgccaccacagtgattcccccccatgtcttcttactgctggttcacctgctt
gttgaagatgaaggacagaaccttcagcagatactgagggtcaccacacagttagctcaa
gcagattcctctcaggtaccaaatctgatcccagttttaatgttcaaattaggaagaccc
ttagaccctgtatcatacaatcacatattgtatactttgcctacacttggtgttcacaag
gtatgcatagggcagatcctgcgggtaattcaactgcttgggaccacaccgcgactaaga
gctgtcacgttgcgcctgctgacatctctgtgggagaagcaggatcgtgtgtaccctgaa
ctgcagcgtttcatggccatgtctgatgcaccctccctctctgagggcaaggagctccag
tgggagaaactgattgccaaagctgcgtccatcagagatatatgtaaacagaggccctat
cagcatggtgcagacatgctggcagccatttctcaggtgttgaatgaatgcaccaagcct
gatcaagctactccagccgccttggtgttacaaggtcttcatgcactctgccaggctgag
gttgtctgtattcgctccacttggaatgctctctctccaaagttgagctgtgacatgaga
ccactcatattgaagaccctgagtgaactgttctctctggttccttccttaacagtcaat
acggttgaatatgagaattttaaagttcaagtcctcagcttcctctggactcacacccaa
aacaaggatcccgttgtagcaagcgctgcctataaatctctgtctcacttcagtgctgga
gaacacaccatcctgcacctgccggaaaagataaggccagaaatgcctgttcctgatgag
ttggatgaagacgagtctgtggacctttccattcctggatcttgctatctcagactgttg
accatcactgctccttcagttttaccagctttggaagaattctttacatctcttgtgaga
caagagatggcgaatatgccccgtggtatatatcactctgcattaaaaggaggcatccgc
tctgaccaagggaagacggtagcaggaatccccaactttatattgaagacgtatgaaacg
aacaagcaaccaggactgaaacctggcctggcaggtggcatgctgttttgctatgatgtt
gccatgtatcagagcaaagatggcaagccactgaatcggctgatggccagtagagggcgg
agcttcaagcagacaacactggccctccttcatgaagtccatgtccagctttcagaatgg
caccatgcaatctttcttccacacgcctggcttgcatatatgactcgagcttaccatgcc
attttacagggaaggatagcagagctggagctgcaattgcaacatggcaaggaaggcccc
gaggaggtgcagtacaaacgaagcacggcctggctctgggtcagagacatgctgacagat
gagatcaccaagacagctgcgaaagagagtccagtggtcaaaggcaatgcactgttggcc
ttaagcagccttgctgtcgtggtgtccaagcatgaagccagcctttcctcagattctgat
ggagtgatggaggtccaacctaatttccttccagtgaaagagtgggtttccatggtgctt
aatactctcctggttattgtagatagccattaccaccccaaaggacaactcttcacctgc
ttttatcataagtcctattctggtgagaacacggcaagtgctattgcgcgctctgctgcc
gccacggctttgtctctcctagtgccggttttcattatctcttgcaaagagaaggttgag
gaaatcctgaacatgctgactgccaggttacctgggaaaccaagtgctgatgaatctcaa
gccgtgcaaatccacatgggccttgcattggggatgtttctctctcgcttgtgtgaagag
aaactcagtgacatgtctggccaacagatgaaccttcttctgatgaagtcgttggatgcc
ctggaaagctgctgttttgaccccagtctggaatacaacacgggctgtatcctgggagtt
ggacttgccctgtccctcatgagccacagcagccacctggagtcacgagttcacgtggca
gcatctctgcggaagctgtctacctacctagatgagagcgggagccagagcaggacattt
caggaggtcctcgcctacacacttagctgtgtgtgtacatcagcgttcagtgctggcatt
attgaagctacagaggctgaagacattatgaacaagcttcagctgttggtagagaacaac
cagcagacttcaggctttgcactggcattaggaaacttggtttatggtttgtctgagtgt
ggacatggaaaagctgaagacttgggcaacagacttcgccccagctggattaaagttgtc
ctgacagagggtgctcccaccatgctctgcctggctgcccttcatggcctggtggcactg
gtaggctccgatgtggaggtcatgcagctaaagtcagaagctatccagaacactcacttt
caagcaagacttaatgaagtcattagaaccttaactgaggttatcagtctctcaggggtg
attggtcttcaatcaaatgcaatatggctgctaggacatcttcatctctctaccttgtct
tcaaatcaaagcagaacttctgttcctactgactacagctatctgcctgaaggcagtttt
attagagcagccattggcttcttcgtcacaggaggaaaaaaaggtcctgaagctgtgcct
ccatcccttctcaaagtagtgatgaaacccatagcaaccattggggaaagctaccagtac
cctccagcaaacttggctgcactcctctctccacttatgaggctaaactttggtgaggat
atacagcaactgtgccttgagattgccgtgactcaagcaccatcatcacagagcgcggct
gcactgctgggcttgtgggtgatgccgccactgatccatggtctgagtctgaatatcaag
aaatacctcctggtatctatgcctctgtgggcaaagcacgtctctgatgaacagatccag
ggttttgttgaaaacctgatggtggcagtttttaaagcagattcccaaccttgccatcct
gagatgtgcccaagtgccttacagggtctgagccaggccatgaaactgcccagtccttcc
caccacctctggagtctgctctgcgatactactgggagaatttttgaccttctgccaaat
aggattcggagaaatgaactcgagatgtacatcagcatagcaaagtgcctctcagagatg
acggacgaaggggccaatcaggttttccaaattactaaggacaacatagaaaaggctgcc
tttgtcaagttgtacttagtctctcaaggacgacttccattgatgagcctgactgatctg
ctcactgctgctgcacagcatcctgagaaggagactctagcctggatgatcctgcacagc
ttataccaggcacgcattgtcaaccatgccaacacaggcgtgctaaagagactggagtgg
ctcttggaactgatgggttatataagaaacattgcttaccagtcagcatctactgagaat
gtggctcctgatgaggctttggacttcttgatgctgatatttgcagctgcagtggtggca
tgggcagaccatgaggctccccttctccttggcctcagtgccagttggttgccatggcac
caggagaacagccctagtggccaacagcagccaacagcagccttgcttggcaggagtctg
atgcatagagtcactgtgcaagaggttctcactcagctccccagtagcatgctactgctg
ctacaaaaagacccatggaggaaacagacccagaagttcattgactggctatttaacatc
atggaaattcctaatgaagcctttgcagcaaagtccaaggatcttttgaaagccaccctg
ctgtccctgagagttctcccagagtttaagaagaaagctgtgtggaccagagcgtatggt
tggtga
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integrated database retrieval system
