Mastomys coucha (southern multimammate mouse): 116096356
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Entry
116096356 CDS
T07224
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013
Nucleocytoplasmic transport
mcoc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116096356 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116096356 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116096356 (Ndc1)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116096356 (Ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
116096356
NCBI-ProteinID:
XP_031233945
LinkDB
All DBs
Position
Unknown
AA seq
776 aa
AA seq
DB search
MQHRRPLFLTPRRTLLRKDFLDSRGRFLESRPAWGPVAMGKFWPVESVQAKLRRDGLAAL
QNSAQAAFRAAPAGSSRGLPAFEQWWRAGTLSPARLRLGAAISMATAASGPCVGGSPRDI
LWRVLGWRIVTSIAWSVLLLPVCITAFIVLSSVDLFHPIQWLSDAFNDFYCSQIIFHLLL
LTVVIIIINIFNVEFYTVVPSIPGSRLALIARILHPQHLTHSFIHAAMGMAVAWCAAIMT
KGQYSSLVVPCTGTERLDSPAAQTCLNEYHLFFLLSGAFLGYSYSLLYFINNMNYLPFPI
IQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHIPKAWISTALDLHTDEQAHR
PLDTIGGLLNVSLLYHVWLCGVFLLMTWYISWILFKIYATEAYVFPVQPPFAEESDECLP
KVLNSNPPLIVKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNDM
TQKLVLYQEAAATNGRMCSSYSVEPKRLSSPEEAAFQTPKPSQTPCVPPLVKTPLFSPKL
STPDVSSPFGTPFGSSIVNRVAGIFDVNTCSGSPQSPQLIRRGPRLWTHTSDQQASTISN
PSPCASITAGGKTVTQPSVIYSWIQSKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDA
QMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRT
SGSLVDTSYKTLRFAFRASLKTAIYRITSTFGDHLNAVQASAEHQKRLQQFLEFKE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccgtcgccctttgtttttgacgccccgacggaccctgcttcggaaggacttt
ttggactccagaggacgcttccttgagtcacggcccgcctgggggcctgtggctatgggg
aagttctggccggttgagtctgttcaggcgaagctgcggagagatggtctggcggctttg
cagaactctgcccaggcagcgttccgggcagccccagctgggtcctcccggggccttcct
gcctttgaacagtggtggcgggcgggcactctgtccccggcacgcttgagactgggggcc
gccatctccatggccacggctgcgagcgggccctgcgtcggcgggtcgccacgggacatc
ctttggcgcgttttgggttggaggatcgttacaagcatcgcttggtcagtactgcttcta
cctgtctgcatcacagcctttatagtcttaagcagcgtcgacttattccaccctatacag
tggctgtcagatgctttcaatgacttctattgttcccaaataatctttcacctcttgctg
ctgactgtggtcattataataataaatattttcaatgtggagttctatacagtcgtgccc
tctatacccggctcccggttggctctgatagcgcggatccttcatccccagcatctcaca
cactccttcatacacgctgcaatgggaatggcggtagcttggtgtgcagccatcatgacc
aagggccagtacagttctctcgtggttccctgcactggtactgagaggcttgatagccct
gctgctcagacctgcctgaatgaatatcatctgtttttcctgctgtcaggagcattcctg
ggctatagctatagccttctgtatttcattaacaacatgaattatcttccgtttcctatt
atacagcagtacaaatttttgcgtttccggagatctctcctcttactagttaaacatagc
tgtgtggaatccctgttcatggtcagaaatttctgcattgtgtattatttttttggccat
attcccaaagcatggattagcactgctctggaccttcacacagatgagcaggctcacaga
cctcttgacacgataggaggcctcctgaacgtctcattgctctaccatgtctggctgtgt
ggtgtcttcctcttgatgacttggtatatctcatggatactcttcaaaatctatgccacc
gaggcttatgtgttccctgttcagccaccgtttgcagaagaatcagatgaatgccttcct
aaagtcttaaacagcaatcccccactcattgtaaagtatttggccttacaggacctaatg
ttgctttctcaatattctccttctcgaaggcaagaagttttcagcctcagccaaccaggt
ggacacccccacaattggactgctatttcgagggagtgtttgaatcttttaaatgatatg
actcagaaactggttctctaccaagaagctgctgctacaaatgggaggatgtgctcatca
tactccgtggaacccaaaagattgagttctccagaagaagctgcttttcagactccaaaa
cctagccagacgccttgcgtgccgcctttagttaaaactccactattttctccaaaatta
tctacacccgatgtttcgagtccttttgggaccccgtttggctccagcatagtgaatcga
gtggctggaatctttgatgtaaacacctgcagtgggtctccccagagccctcagctcata
agaagagggccgaggctgtggactcatacttctgatcagcaagcgtctacaatttctaat
ccatctccttgtgcctctatcactgctgggggtaagacagtgacacagcccagtgtgatc
tactcgtggattcagagtaaacgtgagcagattaagaatttcttgtcaaaacgggtgctg
ataatgtactttttcagtaagcacccagaggcctccattcaggctgttttttcagatgcc
caaatgcatatttgggctttagaaggtctgtctcacctagtagcagcatcatttacagag
gacagatttggagttgtccagaccacactcccagctatccttaatactttgttgactctg
caggaggctgtggacaagtacttcaagctgcctcatgcttctagtaaaccaccccgaaca
tcaggaagcctcgtggatacatcctacaaaacattaagatttgctttcagagcctcactg
aaaaccgctatctaccgtataaccagcacgtttggtgaccatctgaatgctgtgcaagca
tctgcagaacatcagaaaagacttcaacagttcttggagttcaaagaatag
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