Mastomys coucha (southern multimammate mouse): 116096489
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Entry
116096489 CDS
T07224
Symbol
Ptch2
Name
(RefSeq) protein patched homolog 2 isoform X1
KO
K11101
patched 2
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04340
Hedgehog signaling pathway
mcoc05200
Pathways in cancer
mcoc05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116096489 (Ptch2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
116096489 (Ptch2)
09162 Cancer: specific types
05217 Basal cell carcinoma
116096489 (Ptch2)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
116096489
NCBI-ProteinID:
XP_031234187
LinkDB
All DBs
Position
Unknown
AA seq
1221 aa
AA seq
DB search
MVRPLSLGELPPSYTPPARSSAPHILAGSLQAPLWLRAYFQGLLFSLGCKIQRHCGKVLF
LGLVAFGALALGLRVAVIETDLEQLWVEVDSRVSQELHYTKEKLGEEAAYTSQMLIQTAR
QEGENVLTPEALGFHLQAALTASKVQVSLYGKSWDLNKICYKSGVPLIENGMIERMIEKL
FPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDPQQLLEELGPFASLEGFRELLDK
AQVGQAYVGRPCLDPDDPHCPPSAPNRHSRQAPNVAQELSGGCHGFSHKFMHWQEELLLG
GTARDLQGQLLRAEALQSTFLLMSPRQLYEHFRGDYQTHDIGWSEEQASTVLQVWQRRFV
QLAQEALPANASQQIHAFSSTTLDDILHKFSEVSTTRVVGGYLLMLAYACVTMLRWDCAQ
SQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDIFLLAHAFTK
APPDTPLPERMGECLRRTGTSVALTSINNMVAFFMAVLVPIPALRAFSLQAAIVVGCNFA
AVMLIFPAILSLDLRRRHHQRLDILCCFSSPCSAQVIQMLPQELGDRAVPVGIAHLTATV
QAFTHCETSSQHVVTILPPQAHLLSPASDPLGSELYSPGGSTRDLLSQEEGMRPKAACRS
LLCAHWTLAHFARYQFAPLLLQTQAKALVLLFFGALLGLSLYGATLVQDGLALTDVVPRG
TKEHAFLSAQLRYFSLYEVALVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRT
WLHYYRSWLQGIQAAFDQDWASGRITRHSYRNGSEDGALAYKLLIQTGNAQEPLDFNHLT
TRKLVDKEGLIPPELFYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRSE
SWGSSPGTWSSTHTGPDPPTPHRSAYSISSSAPLSSPVPAAQPLEFAQFPFLLHGLQKTA
DFVEAIEGARAACTEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL
LLLSPWTAGLIVLVLAMTTVELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVHVALGFL
TSHGSRNLRAASALEQTFAPVTDGAVSTLLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLL
HGLLLLPVLLSILGPPPQVVQLYKESPQAVSSAAPQRGGLRWGMPPTLPQSFARVTTSMT
VALHPPPLPGAYVHPASDEPT
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggttcggccactgtcccttggagagctgcctcccagctacacacctccagctcggtcc
tccgcacctcatattctagctgggagcctgcaggctcctctctggcttcgtgcttacttc
caaggtctactcttctccctggggtgcaagatccagagacactgcggcaaagtgctcttc
ctgggactggtggcctttggggctctggcactgggtctccgagtggctgtaattgagaca
gacttagaacagctctgggtagaagtggacagcagggtgagccaggagctacactacacc
aaggagaagctaggggaggaggccgcgtacacctcccagatgttgattcagaccgcgcgc
caggagggggaaaacgtcctcaccccagaggcacttggctttcacctccaggccgcgctc
acggccagtaaagtacaagtatcactttatgggaagtcctgggatttaaacaaaatctgc
tacaagtcaggggttccccttattgaaaatggaatgattgagcggatgattgagaagttg
tttccctgtgtgatcctcaccccgcttgactgcttctgggaaggagccaaactccaaggg
ggctctgcctacttaccgggccgcccagatatccagtggaccaacctggacccccagcag
ctgctggaggagctgggcccctttgcctctctggagggcttccgggagctgctggacaag
gcacaggtgggccaggcctatgtggggcgaccctgtctggaccccgatgacccccactgt
ccacctagtgctcccaaccgtcacagcaggcaggcacccaatgtggctcaggagctgagt
gggggctgccatggcttctcccacaagttcatgcactggcaggaggaactgctactgggg
ggcacagccagagatctccaaggacagctgctgagggcagaggccttgcagagcaccttc
ctgctgatgagtccccgtcagctctatgagcacttccggggcgactaccagacgcatgac
atcggctggagtgaggagcaggccagcacagtgctgcaggtttggcagaggcgctttgtg
cagctagcccaggaggctctgccggccaacgcatcccagcagatccatgccttctcctcc
accaccctggatgacattctgcacaagttctctgaagtcagcaccacccgtgtggtagga
ggctatctgctcatgctggcctatgcttgcgttacaatgctacggtgggactgcgcccag
tcccagggtgctgtaggtcttgctggggtgttgctggtggccctggcggtggcctcaggt
cttggtctttgtgccctacttggcatcacttttaatgctgccactactcaggtgctgccc
ttcttggctctgggcatcggcgtggatgacatcttcctgctggcacatgccttcacaaag
gcgccacccgacacccctctcccagagcgtatgggtgagtgtttgagacgcacgggcacc
agtgtggcactcacgtccatcaacaacatggtcgctttcttcatggctgtcctggttccc
attcctgcgctgcgggccttctccctgcaggcagccatagtggtcggctgcaacttcgca
gcggtgatgcttatcttcccggccatcctcagtctcgacctgcgccggcgccaccaccag
cgcctggacattctctgctgcttctctagcccctgctctgctcaagtcattcagatgctg
ccccaggagctaggggacagagcagtaccagtgggcattgcccacctgactgccaccgtg
caagcctttacccactgcgaaaccagcagccagcatgtagtcaccattttgcctcctcaa
gcccacctgctgtctccagcttctgacccactgggctccgaactctacagccctggaggg
tccacacgggaccttcttagtcaggaggaggggatgaggccaaaggcagcctgcaggtcc
ctcctctgtgcccactggactctcgcccattttgcccgctatcagtttgcgcctttactg
ctccagacacaagccaaggccctggtgttgctgttctttggggctcttttgggcctgagc
ctctatggagccaccttggtacaagatgggctggccctgacagatgtggtccctcggggc
accaaggagcatgctttcctgagcgcccagctcaggtacttctccctgtacgaggtggct
ctggtgacacagggtggctttgactacgcccactcccaacgcgccctctttgatctgcac
cagcgcttcagttccctcaaggctgtgctgcccccacccgccacccaggcaccccgcacc
tggcttcactactaccgcagctggcttcaaggtatccaggctgcatttgaccaagactgg
gcttcaggccgcatcacccgccactcttaccgcaacggctctgaagatggcgccctggcc
tacaagctgctcatccaaaccgggaatgcccaggagcctctggatttcaaccatctgacc
acaaggaaactggtggacaaggagggactcattcccccagagctcttctacatggggcta
acagtgtgggtgagcagcgaccctctgggcctagcagcctctcaggccaacttctacccc
ccacctcccgaatggctgcatgacaaatacgataccaccggagagaaccttcgcagtgag
tcctgggggagctcgcctggaacctggtcctcaacccacacaggccctgaccctccaacc
cctcaccgttctgcttactccatctcctcctctgctcctctgtcctctccagtcccggca
gcccagcccttggagtttgcccagttccccttcctgttgcatggtctccagaagactgca
gactttgtagaagccatcgaaggggcccgggcggcgtgcacagaggcaggccaggcaggg
gtgcatgcctaccccagtggctcccccttcctcttctgggagcagtatctgggacttcgg
cgctgcttcctgctggcggtctgcatcttgctggtgtgcaccttcctcgtctgtgccctg
ctcttactcagcccatggacagcaggtctcatagtgctggtcctggcgatgacgactgtg
gagctctttggtatcatgggattcctgggcatcaaactgagtgccatccccgtggtaatc
ctcgtggcctccataggcattggtgttgaattcacggttcatgtggctctgggcttcctg
accagccatggcagccggaacctgcgggctgctagcgctctggaacagacctttgcccct
gtgactgatggcgctgtctctacattgctgggtctgctcatgcttgctggttctaacttt
gacttcatcataaggtacttcttcgtggtgctgacggtgctaacactcttgggcctgctc
catggactcctgctgctgcctgtgctgctctctatcctgggccccccaccacaggtggtg
cagctatacaaggagagtccacaggccgtaagctctgcggctccacaaagaggtgggctc
aggtggggcatgccccccaccctgccccagagttttgccagagtgactacctccatgact
gtggccctccacccaccaccactgcctggagcatacgtccacccagcctccgatgagccc
acgtag
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