Mastomys coucha (southern multimammate mouse): 116096794
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Entry
116096794 CDS
T07224
Symbol
Arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03082
ATP-dependent chromatin remodeling
mcoc04714
Thermogenesis
mcoc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116096794 (Arid1a)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116096794 (Arid1a)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116096794 (Arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcoc03000
]
116096794 (Arid1a)
03021 Transcription machinery [BR:
mcoc03021
]
116096794 (Arid1a)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116096794 (Arid1a)
Transcription factors [BR:
mcoc03000
]
Eukaryotic type
Helix-turn-helix
ARID
116096794 (Arid1a)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116096794 (Arid1a)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116096794 (Arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
116096794
NCBI-ProteinID:
XP_031234847
LinkDB
All DBs
Position
Unknown
AA seq
2297 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPPPSELKKAEQQQREEAGGEAAAAAAERGEMKAAAGQESEG
PAVGPPQPLGKELQDGAESNGGGGGGGGGAGGGPGAEPDLKNSNGNAGPRPALNNNLPEP
PGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG
LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRGAYPPPPQAYALSSPRGGTPG
SGAAAAAAAGSKPPPSSSASASSSSSSFAQQQRFGAMGGGGPSAAGGGTPQPTATPTLNQ
LLTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAAASGGAQQ
RSHHAPMSPGSSGGGGQPLARTPQSSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGH
GYPGQPYGSPTPQRYPMTMQGRAQSAMSSLSYAQQMPPYGQQGPSAYGQQGQTPYYNQQS
PHPQQQQPPYSQQPPSQTPHAQPSYQQQPQTQQPQLQSSQPPYAQQPSQPPHQQSPTPYP
SQQPTTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQPQQSQQTAYSQQ
RFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEG
ALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLS
PAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYTSPQPGSALSPRQ
PSGGQLHSGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPNAGMAGSMNPM
GAGGQMHGQPGIPPYGTLPPGRMTHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQ
ESAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGAMA
NNSAGMAASPEMMGLGDVKLTPAAKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELG
GEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRE
LATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSP
AGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGS
DPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGG
MGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGSMGTGAPQPNLMPSTPD
SGMYSPSRYPPQQQQQQQQQQQQQQQQQRHDSYGNQFSTQGTPSSSPFPSQQTTLYQQQQ
QQNYKRPMDGTYGPPAKRHEGEMYSVPYSAGQGQPQQQQLPAAQSQSASQTQAAQPSPQQ
DVYNQYSNAYPATASAATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPI
QASAEVPQQGTMWQGRNDMTYNYANRQNTGSAPQGPAYHGVNRTDEMLHTDQRANHEGQW
PSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSP
FLHSGMKMQKAGPPVPASHIAPTPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIG
TPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLI
EIFGILKEYEVGDPGQRTLLDPGRFTKVSSPAHTEEEEEEEYLDPKLEEEEEEGVGNDEE
MAFLGKDKPSSENSEEKLVSKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIG
GGDTTEHIQTHFESKIELLPSRPRVPCPTPPRKHLTTVEGTPGTTEQEGPPPDGLPEKRI
TATMDDMLSTRSSTLTEGTKSTEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLC
TLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAP
LTYEKEEEQDQGVSCDKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGL
LHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLY
STMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQF
QQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMN
SLVSQVICDVLFLIGQS
NT seq
6894 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccg
ccgccctcggagctgaagaaagccgagcagcaacagcgggaggaggcggggggcgaggcg
gcggcggcggcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggc
cccgccgtggggccgccgcagccgctaggaaaggagctgcaggacggggccgagagcaat
gggggtggcggcggcggcggcggcggagccggtggaggccccggcgcggagccggacctg
aagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcccggagccg
cccggcggcggcggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcg
gccgccctgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtccgcc
gtggccgccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggc
ctggcagcgctgcagagcggcggtggcgggggcctggagccctacgccgggccccagcag
aactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcggc
gcctaccccccgcctccccaggcctacgcgctgagctccccgagaggcggcactccgggc
tccggcgcggcggcggcggcggccgccggctccaagccgcctccctcctccagcgcctct
gcctcgtcgtcgtcttcgtccttcgctcagcagcagcgcttcggggccatggggggaggc
ggcccctcagcggccggcgggggaactccccagcccaccgccacccccaccctcaaccaa
ctgctcacgtcgcccagctcggcccgtggctaccagggctaccccgggggcgactacggc
ggagggccccaggacgggggcgcgggcaaaggcccggcggacatggcctcgcagtgctgg
ggggctgctgcggcggcggcggcggcggcggcagcggccgcctcgggaggggcccaacaa
aggagccaccacgcgcccatgagccccgggagcagcggcggcggggggcagccgctcgcc
cggacccctcagtcatccagtccaatggatcagatgggaaagatgagacctcagccgtat
ggcgggactaacccatactcgcaacaacagggacctccttcaggaccgcagcaaggacat
gggtacccagggcaaccatatgggtccccgactccacagcggtaccccatgaccatgcag
ggccgggctcagagtgccatgagcagcctctcttatgcacagcagatgccaccttacgga
cagcaaggccccagtgcttatggtcagcagggccagactccgtactataaccagcaaagt
cctcacccccagcagcagcagccaccttactcccagcaaccaccatcccagacccctcat
gcccagccttcatatcagcagcagccgcagactcagcaaccacagcttcagtcctctcag
cctccgtatgcccagcagccatcccaacctccacatcagcagtccccaactccatatccc
tcccagcagcctaccacacaacagcacccccagagccagcccccctactcacagccacag
gcacagtctccctaccagcagcagcaacctcagcagccagcatcctcgacgctctcccag
caggctgcgtatcctcagccccagccccagcagtcccagcaaactgcctattcccagcag
cgcttccctccaccacaggagctttctcaagattcatttgggtctcaggcttcctcagcc
ccctcaatgacctccagtaaaggagggcaagaagatatgaacctgagtcttcagtcaaga
ccttccagcttgcctgatttgtctggttcaatagatgatctccccatggggacagaagga
gctctgagtcctggcgtgagcacatcagggatttccagcagccaaggagagcagagcaat
ccagctcagtctcctttttctcctcacacctcccctcacctgcctggcatccgaggcccg
tccccatcccctgttggctctcctgccagtgtcgcgcagtctcgctcaggaccactctcg
cctgctgcagtgccaggcaaccagatgccacctcggccacccagtggccagtcggacagc
atcatgcacccttccatgaaccaatcaagcattgcccaagatcgaggttatatgcagagg
aacccccagatgccccagtacacttcccctcagcccggctcagccttatctccacgtcag
ccttctggaggacagctgcactcgggcatgggctcctaccagcagaactccatggggagc
tatggtccccagggaagtcagtatggcccacaaggaggctatcctaggcaacctaactat
aatgccttgcccaacgccaactaccccaatgcaggcatggctggaagtatgaaccctatg
ggtgctggaggtcagatgcacgggcagcctggaattccaccttacggcacactccctcca
gggaggatgactcatgcgtctatgggcaacaggccttatggccctaatatggccaatatg
ccgcctcaggttgggtcagggatgtgtcctccaccaggggggatgaaccggaaaactcaa
gaatctgctgttgccatgcatgttgctgccaactccatccaaaacaggccaccaggctac
ccgaatatgaatcaagggggcatgatgggaactggacctccctatggacaggggatcaat
agtatggctggcatgatcaaccctcagggacccccataccccatgggtggagccatggcc
aacaattcagcagggatggcagccagcccagagatgatgggccttggagatgtgaagtta
actcccgccgcaaaaatgaacaacaaggctgatggaacacccaagacagaatccaaatct
aagaaatccagttcttctacaaccaccaatgagaagatcaccaaattgtatgagttgggt
ggtgagcctgagaggaagatgtgggtggaccggtacctggccttcaccgaagaaaaggcc
atgggcatgacaaatcttcctgctgtggggaggaagcctctggacctctatcgcctctat
gtgtctgtgaaggagattggtgggttgactcaggtcaacaagaataaaaaatggcgggaa
cttgcaaccaacctcaatgtgggtacatcaagcagtgctgccagctcattgaaaaagcag
tatatccaatgtctctatgcctttgagtgcaagattgaacggggagaagaccctcccccc
gacatctttgcagctgctgattccaagaagtcccaacccaagatccagcctccctcccct
gcgggatcagggtctatgcaggggccacaaacccctcagtcaaccagcagttctatggca
gaaggaggagacctaaagccaccaactccagcatctacaccacatagtcaaattcccccc
ttaccaggcatgagcaggagcaactcagtcggaatccaggatgcctttcctgatggaagt
gaccccacattccagaagcggaattccatgactccaaaccctgggtaccagcccagtatg
aatacctctgacatgatggggcgcatgtcctatgagccaaataaggatccttacggcagc
atgaggaaagcgccaggaagtgatcccttcatgtcctcagggcagggccccaatggtggc
atgggtgacccctacagccgtgctgctggccctgggctgggaaatgtggcgatgggacca
cggcagcactatccctacggaggtccttacgacagagtgaggacggagcctggaatcggc
cctgaaggaagtatgggcactggagcccctcagccaaatcttatgccttccaccccagat
tcggggatgtattctcctagccgctaccccccacagcagcagcagcagcagcagcagcag
cagcagcaacagcagcagcagcagcgacatgattcctatggcaatcagttctctacccaa
ggcaccccttccagcagccctttccccagccagcagaccacactgtatcagcagcagcag
cagcagaattataagaggccaatggatggcacatatggccctcctgccaagcggcatgaa
ggggagatgtacagtgtgccctatagcgctgggcaagggcagcctcaacagcaacagttg
cctgcagctcagtcccagtctgccagccagacgcaagctgcccagccttctcctcagcag
gatgtgtacaaccagtatagcaatgcctaccctgctactgcctccgctgctactgagcgc
cgaccagcaggcggcccccagaaccaatttccattccaatttggccgagaccgagtctct
gcacctcctggttccagtgcccagcagaacatgccaccacaaatgatgggcggccccata
caggcatcagctgaggtccctcagcaaggcaccatgtggcagggacgaaatgacatgacc
tacaattatgccaacaggcagaacacaggttctgccccccagggccctgcgtatcatggt
gtgaaccgaacagatgaaatgctccacacagatcagagggccaaccatgaaggccagtgg
ccttcccatggcacacgccagcctccgtatggtccttcagcccctgttccccccatgaca
agaccccctccatctaactaccagcccccaccaagcatgcagaatcacattcctcaggta
tccagccccgctcccctcccccggcccatggagaaccgtacttctcctagcaagtctcca
ttcctgcactctgggatgaaaatgcaaaaggcaggtccaccggtgcccgcttcgcacata
gcgcctacccctgtgcagccacctatgattcggagggatatcactttcccacctggctct
gtagaggccacacagcctgtgttgaagcagagaaggcggctcacaatgaaagacattgga
accccggaggcatggcgggtaatgatgtccctcaagtccgggctcctggcagagagcacg
tgggcgttagacaccattaacatcctactgtatgatgacaacagcattatgaccttcaac
ctcagtcagctcccagggttgctggaactccttgtggaatatttccgtcgatgcctgatt
gaaatctttggcattttaaaggagtatgaggtaggggacccaggacagagaacattacta
gaccctgggagattcaccaaggtgtctagtccagcccacacagaggaagaagaggaagaa
gaatacctagatcctaaactggaggaggaagaggaagaaggggttggaaatgatgaggag
atggcctttttgggcaaggacaagccatcctcggagaatagtgaggagaagctagtcagt
aagtttgacaagctcccggtaaagatcgtgcagaagaatgacccatttgtggtggactgc
tcagataagcttgggcgcgtgcaggagtttgacagtggcctgctacactggcggattggt
ggtggggacactactgagcatatccagacccactttgagagcaagatagagctgctgcct
tccaggcctcgtgtgccctgcccaacgccccctcggaaacacctcacaacagtagagggt
acaccagggacaacagagcaggagggccccccgcctgatggccttccagaaaaaaggatc
acagccactatggatgacatgttgtccacccggtccagcacattgactgagggaacaaag
agtacagaggccaccaaggaaagcagcaagtttccatttggcattagcccagcacagagc
caccggaacatcaaaattttagaggatgaaccccatagtaaagatgagaccccactgtgt
acccttctggactggcaggattcccttgctaagcgctgtgtctgtgtctccaataccatc
cggagcctgtcgtttgtgccaggcaatgactttgagatgtccaaacacccagggctgctg
cttatcctgggcaagctgatcctactgcaccataagcacccagaacggaagcaggcacca
ctaacttatgagaaagaggaggaacaggaccaaggggtgagctgtgacaaagtggagtgg
tggtgggactgcttggagatgctccgggaaaacacgctggttaccctcgccaacatctcg
gggcagttggacctatccccataccctgagagcatctgcctgcctgtcctggacggactc
ctacactgggcagtttgcccttcagctgaagcccaggaccccttctcaaccctaggcccc
aatgctgtcctctctccccagaggttggtcttggaaaccctcagcaaactcagtatccag
gacaacaatgtggacctgatcctggccacgcccccttttagccgcctggagaagttgtat
agtaccatggtgcgcttcctcagtgaccgaaagaacccagtgtgccgggagatggccgtg
gtactgctggcaaatctggcccagggggacagcctagcagcccgggccattgcagtgcag
aagggcagcatcggcaacctcctgggtttcctggaggacagccttgctgccactcagttc
caacagagccaggcaagcctcctgcatatgcagaacccaccctttgaaccaactagtgtg
gacatgatgcggcgggctgcccgagcactgcttgccctggccaaggtggacgagaaccac
tcagagttcactctatatgagtcacggctgttggacatctccgtgtcaccattgatgaac
tcattggtttcacaagtcatttgtgatgtactgtttttgattggccagtcatga
DBGET
integrated database retrieval system
