Mastomys coucha (southern multimammate mouse): 116097823
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Entry
116097823 CDS
T07224
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03015
mRNA surveillance pathway
mcoc05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116097823 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
116097823 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116097823 (Hbs1l)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116097823 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
AAA_29
Motif
Other DBs
NCBI-GeneID:
116097823
NCBI-ProteinID:
XP_031236421
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEEEYCISPSTAAQFIYSRRDNPEEEHGYEDLKES
SDSLWNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSMVLEQGG
VQTLKEKSERAVCAGQPSKGKSVISRSSQSESEIVPKVAKMTVSGKKQTMGFEVPGLTSE
ENGHHVRAPHKGPPGDDVSIASPNIPETGTPKSALPPPSIQTAEELGSTPTPMRKSGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAINKMDQVNWQQERFQEIT
GKLGHFLKQAGFKESDVAFVPTSGLSGENLTTRSQSSDLTKWYKGLCLLEQIDSFKPPQR
SIDKPFRFCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHVSLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFSIEVPITKGFPVLL
HYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYGGSTVAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcggaacgtccggggctataactacgatgaagactttgaagatgatgat
ttgtatggccagtctgtggaggaggagtactgcatttcaccatcaacagctgctcagttt
atttactcacgacgtgacaaccctgaagaagaacatggttatgaagatctgaaagagtct
tctgattctctttggaatcaccaattaagtgaaattgaccaagctcgcctgtattcatgc
cttgatcacatgagagaggtactgggggacgctgtgcccgatgacatactgactgaggca
attttgaaacacaagtttgatgtgcagaaggctttgtccatggttctggaacaaggtggt
gtgcagacgttgaaggagaagagtgagcgagcagtgtgtgcaggacagccttcaaaagga
aaatctgtgatatctcggtcatcccagagtgaatctgaaattgtgccaaaagttgctaaa
atgactgtatccgggaagaagcagaccatgggatttgaagtgcctggcttaacttctgag
gaaaatggacatcatgtgcgtgctcctcataaaggacctcctggtgatgatgtgagcatc
gcttctcctaacattcctgagaccggcactccaaaatctgccctcccacctccctccatt
caaacagcagaagagctgggctccactccgacaccaatgagaaagtctggcaagctgagg
caacagatagacgtgaaagcagaattggaaaagcggcagggtggaaagcagctcctcaac
ttagtggttattggtcatgttgatgctgggaaaagtactctgatgggccatatgctttat
cttctgggtaatgtaaacaaaagaactatgcataagtatgagcaagaatctaaaaaggct
ggcaaggcttcatttgcatatgcatgggtcttggatgaaactggagaagaaagggaaagg
ggagtaacgatggatgtaggcatgacaaagtttgaaaccacaaccaaagttattacctta
atggatgctccgggccataaggacttcattccaaacatgatcacaggagccgctcaggct
gacgttgctgtcttggtcgttgatgccagcagaggagagtttgaagctggatttgagacg
ggaggacagactcgggagcatggccttttggtccgatctctgggagtgacacagcttgct
gtggctatcaataaaatggaccaggtaaattggcaacaagaaagatttcaagagattact
ggaaaacttgggcactttctcaagcaagcaggttttaaggagagtgatgtcgcttttgtc
ccgacaagcggtctgagtggtgagaatttaaccacaaggtcacagtccagtgacctcacg
aagtggtacaaagggctgtgcttattggagcagattgattccttcaagccccctcagcgc
tccatcgacaagccttttagattctgtgtgtctgatgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttatatccagactggtgaccgactattagcc
atgccacccaatgaaacctgtactgctaaaggaatcactctgcatgatgagcctgtcgat
tgggcagcagcaggcgatcacgttagtcttactttggttgggatggacatcatcaaaatc
aatgtcggctgcatattttgtggtcccaaagaacccattaaggcttgcacccgcttcaga
gcccggatcctcatcttcagtattgaagttcctatcactaaagggtttcctgtgctgtta
cactaccaaaccgtcagcgagcctgctgttattaagcgattgattagtgtcctaaacaaa
agtactggtgaagtcacaaagaagaagcccaagttactgaccaagggccagaacgccttg
gtagagctgcagacacaaagaccagtggctcttgagctctacaaagacttcaaggagctg
gggcggtttatgctgcgttatggtggctccacggtagctgccggtgttgtcactgagata
aaagagtga
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