Mastomys coucha (southern multimammate mouse): 116098717
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Entry
116098717 CDS
T07224
Symbol
Cnot4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116098717 (Cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcoc03000
]
116098717 (Cnot4)
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116098717 (Cnot4)
04121 Ubiquitin system [BR:
mcoc04121
]
116098717 (Cnot4)
Enzymes [BR:
mcoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116098717 (Cnot4)
Transcription factors [BR:
mcoc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116098717 (Cnot4)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116098717 (Cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116098717 (Cnot4)
Ubiquitin system [BR:
mcoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116098717 (Cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
116098717
NCBI-ProteinID:
XP_031237381
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
PSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHSAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFGFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNNSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSW
DSPGSWTDPAIITGIPASSGNTLDSIQDDNPPHWLKSLQALTEMDGPSAASSQPHHSAPF
NTQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcaaaggaagaccctgtggaatgccctctttgcatggagccc
ttggaaatagatgatattaactttttcccttgcacctgtggctaccagatatgccgattt
tgttggcatcgaattcgcactgatgagaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttacaaaccactttcccaggaagaattgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatctcagaaaatcgaaaacatttg
gctagtgtacgtgttgtacaaaaaaaccttgtgtttgttgtaggtctgtcacagcgccta
gcagacccagaagttttaaaacgaccagagtattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccgagtgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagcaatacaatgtgtcaacaatgtggtg
gtagatggtaggacactaaaggcatctttaggtacaacaaagtactgcagttatttctta
aagaacatgcagtgtccaaagcctgactgtatgtatctacatgaattgggagatgaggca
gccagcttcacaaaagaggaaatgcaggcgggtaagcaccaagagtatgaacagaagctc
ctccaagaattatataaattaaatcccaattttcttcagctatctacgggttcagttgat
aagaataagaacaaagtgacaccattacaaaggtatgatacccccattgacaaaccttca
gattctctcagtatagggaatggtgataattcccaacagatatctaacagtgatacgcct
tcaccaccacctggtttatcaaaatctaatcctgtcatccccatcagttcatccaatcac
agtgcaaggtctccttttgaaggggcagtaacagagtcacagtcattattctcagacaat
tttcgccaccccaatcctataccaagtgggcttcctccttttcccagctctccacagaca
cccagtgattggcctacagctccagaaccacagagcctcttcacatcagaaacaatccca
gtatcttcatctacagactggcaagcagcatttggctttggttcttctaaacaaccagag
gatgacttggggtttgatccctttgatgtcactcgaaaagccttagcagacctgattgag
aaggaactatccgtccaagaccagccttccctttctcccacatctcttcagaactcctcc
tcacacactacaaccgccaaaggtccaggctctggattcctgcattctgctgcacctacg
aatgccaactctcttaatagtaccttttcagtcttgccacagaggttccctcaatttcag
cagcaccgagcagtttataattcgttcggttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatcccc
atagcagacaacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcttcttccccc
tccaacgccaaccacagtgcaccaacgtccaacactgccaccacggacagcgtgagttgg
gacagccctggcagctggacagacccagccatcattacaggtattccagcatcttcagga
aacactttagactctattcaagacgacaatcctccacactggctaaaatccctacaggcc
ctcacagagatggacggccccagcgctgcctcgtcacagccccatcacagcgcccccttc
aacacacagatccctctgcacagagccagttggaacccctacccacctccttcaaatccc
tccagtttccactccccacccccaggcttccagacagccttcagaccccccagcaaaacc
cccacagatctgctacagagttccacactggaccgccactaa
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