Mastomys coucha (southern multimammate mouse): 116099341
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Entry
116099341 CDS
T07224
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mcoc04121
]
116099341 (Pdzrn3)
Enzymes [BR:
mcoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116099341 (Pdzrn3)
Ubiquitin system [BR:
mcoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
116099341 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
116099341
NCBI-ProteinID:
XP_031238625
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQDLPEHLERCDFAPARCRHAGCGQL
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNSALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPGEHPSSHEYYDPNDYMGDIHQDMDRDELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGEDATASSNPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPEDECERFRELLELKCQVQSTS
PYSLYYPSSPLDAAGKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYRESW
MLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSL
RRVAECSSEGATANIEAYRPSPKNLLAITEDPEVSSPNYSPSAKELDPSQALEIKERRVS
DGSRSPTASPKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLV
SMCKDLNSSNSAEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDA
MSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQASDDRKEMNILELSHK
KMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcgagttggaccgcttcgacggcgacgtggaccctgatctgaagtgcgccttg
tgccacaaggtcctggaggacccgctgaccaccccgtgcggccacgtcttctgcgccggc
tgcgtgctgccctgggtggtgcaggagggcagctgcccctcgcgttgtcgcggtcgcctc
tcggccaaggagctcaaccacgtcctgccgctcaagcgtctcatcctcaagttggacatc
aagtgcgcgcacgcagcgcggggctgcggccgggtggtcaagttgcaggacttgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccagctg
ctgctgcgacgcgacgtggaggcccacatgcgcgacgcgtgcgacgcgcggcccgtgggg
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgggcgggcggccac
tgctgcgcgcgggctctgcgggcgcacaacagcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgagagaagtcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcacgcctcgactcgctcagccgctgcgtggccgcgccgccaggcggc
aagggcgaagagaccaaaagcttgactcttgtcctgcatcgggactctggctccctggga
ttcaatatcattggcggccgaccctgtgtggacaatcaagatggatcctccagtgaagga
atctttgtatccaaaatagttgacagcgggccagcagccaaggaaggaggcctgcaaatt
catgacaggattattgaggtcaacggcagagacttatcccgagccactcatgaccaggcc
gtggaggctttcaagacagccaaggagcccattgtggtgcaggtgttgaggaggacgcct
cgaaccaagatgttcacgcctgcctcagagtcacagctggtagacacgggcacccaaacc
gacatcactttcgagcacatcatggccctgacaaagatgtcttcccccagcccacctgtc
ctggatccctacctgctgcctggagagcacccctcatcccatgaatactatgatcccaat
gactacatgggggacatacatcaggacatggacagggacgagctggagctggaggaagtg
ggcctctacaggatgaacagccaggacaagctgggcctcaccgtgtgctaccggacggat
gacgaagatgacattggaatttatataagtgagattgacccaaacagcattgcagccaag
gatggacggatccgtgaaggagaccgcatcatccagattaatggcatagaagtacagaac
cgtgaggaggccgtggcacttctaaccagtgaagaaaataagaacttttcattgctgatt
gcaaggcctgagctccagctggatgagggctggatggacgacgacaggaacgactttctg
gatgacttacacatggacatgcttgaggagcagcaccaccaggccatgcagttcactgcc
agcgtgctgcaacagaagaagcatgaggaagacggtgggaccacagacacagccaccatc
ttatccaaccagcacgagaaagacagtggtgtggggcgaacggatgagagcacccgcaat
gacgaaagctcagaacaggagaataacggtgaagatgccacagcatcctccaacccgctg
gcgggccagaggaagctgacctgtagccaggataccctgggcagtggcgacctgcctttc
agcaacgagtccttcatctctgcagactgtaccgatgtggactacctgggcatcccagag
gatgagtgtgagcgtttccgagaactgctggagctcaagtgccaggtgcagagcaccagc
ccctacagcctgtactaccccagcagtccgctggatgctgctggcaagagtgatccagag
agcgtggacaaggagctggagctactcaatgaggagttgcgcagcatcgagctggagtgc
ctgagcatcgtgcgcgcacacaaaatgcagcagctcaaggagcagtaccgcgagtcctgg
atgctgcaccacagtggcttccgcaactacaacaccagcgtggacgtgcgccgccatgag
ctctccgacatcactgagctgccagagaagtcagacaaggatagttcaagcgcctacaac
actggggagagctgcaggagtactccactcaccctggagatctccccggacaactccctt
cggagagtggccgagtgcagtagtgaaggggccacagctaacattgaagcttacaggcca
tcccccaagaatctgctagccatcaccgaggatcctgaagtaagcagcccaaactacagc
cctagcgccaaagagctggaccccagccaggctttggagatcaaagagcgccgagttagt
gatggcagcaggagccccaccgccagcccaaagctgggcagtgcctacctgccctcatac
caccactccccatacaaacacgcgcacatcccagctcacgcacaacactaccagagctac
atgcacctgatccagcagaagtcagcagtggagtatgcacagagccagatgagcctggtg
agcatgtgcaaggacttgaactcttctaactcagcggaacccaggatggaatggaaagtg
aagatccgcagtgatgggacgcgctacatcaccaagaggccggtacgtgacaggcttttg
cgggagcgtgcgctgaagatccgcgaggagcgcagtggcctgaccacggatgatgacgcc
atgagcgagatgaagatggggcgctactggagcaaggaggagcgcaagcaacatctggtg
aaggccaaggagcagaggcggaggcgcgagtttatgatgcagagcaggctggattgtctg
aaggagcagcaggcctccgacgacaggaaggagatgaacatcctggaactgagccacaaa
aagatgatgaagaagaggaacaaaaagatctttgacaattggatgactatccaagaactc
ttaacccacggcacaaaatcgccagatggcactagggtatacaattccttcctgtcggtg
actactgtataa
DBGET
integrated database retrieval system
