Mastomys coucha (southern multimammate mouse): 116099598
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Entry
116099598 CDS
T07224
Symbol
Chd4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03082
ATP-dependent chromatin remodeling
mcoc05165
Human papillomavirus infection
mcoc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116099598 (Chd4)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
116099598 (Chd4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
116099598 (Chd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116099598 (Chd4)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
116099598 (Chd4)
Chromatin remodeling factors
NuRD complex
116099598 (Chd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD_2
DEAD
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
116099598
NCBI-ProteinID:
XP_031239284
LinkDB
All DBs
Position
Unknown
AA seq
1946 aa
AA seq
DB search
MASGLGSPSPCSAGSDEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP
RDPKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL
GPKKEKKSKSKRKEEEEEEEDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESM
VTATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGG
FGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT
AVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ
WEAKEDNSEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPL
PEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPE
RQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKN
KDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVE
IQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLD
ATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLV
SAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKE
ASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL
TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKA
DVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCN
HPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLD
LLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT
VIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVR
PGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDR
NQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRH
HYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRGVCGRPRPPPTGRSTRAVGPAHLPSLP
PDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIE
VLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGA
DGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEVEENKKMSQ
PGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGVKIEENNLKEEENTEGEKEAKPAAPEVTA
ESAQLPAPPPAPAPAPEDDKAPAEAPEGEEKVEKAEAKDRTEEPMETEPKGATEVEKVEE
KSAVDLTPIVVEDKEEKKEEEEKKEVMLQNGETPKDLSDEKQKKNLKQRFMFNIADGGFT
ELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFK
GEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFAEVE
CLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQ
MSERNILSRLANRAPEPPPQQVAQQQ
NT seq
5841 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcctgggttccccgtccccctgctcagcgggcagtgacgaggaggatatg
gatgcacttctgaacaacagcctgcccccaccccatccagaaaatgaggaagacccggaa
gaggatctatcagaagcagagactccaaagctcaagaagaagaaaaagccgaagaaaccc
cgagaccctaaaatccctaagagcaagcgccaaaaaaaggagcgtttactcttatgccgg
cagctgggggacagctctggggaggggccggagttcgtggaggaggaggaagaggtggct
ctgcgctcagacagtgagggcagcgactatactcctggcaaaaagaagaagaagaagctc
ggacctaagaaagagaagaagagcaaatccaagcggaaggaggaggaggaagaggaggaa
gatgatgatgattccaaggagcctaagtcatccgcccagcttttggaagactggggcatg
gaagacattgaccatgtgttctcagaggaagactaccggaccctcaccaactacaaggcc
ttcagccagtttgtccgacccctgattgctgctaaaaaccccaagattgctgtctccaag
atgatgatggtcttgggtgcaaagtggagggaattcagtaccaacaaccccttcaagggc
agctctggagcgtcagtggcggccgcagctgcagcggctgtggctgtggtggagagcatg
gttacagctactgaagtggctcctccccctccccctgtggaggtgccgatccgcaaggcc
aagaccaaggagggcaaaggtcccaatgctcggaggaagcctaaaggcagtcctcgagtg
cctgatgccaagaagcccaaacccaagaaagtagctcctctgaaaatcaagctgggaggt
ttcggctccaagcgtaagagatcctcgagtgaggatgacgatttagatgtggagtctgac
tttgatgatgccagtatcaatagctattctgtttcggatggttccaccagccgcagtagt
cggagccgcaagaaactccggaccactaaaaagaaaaagaaaggcgaggaggaggtgact
gctgtggatggttatgagacagaccaccaggactattgcgaggtgtgccagcaaggcgga
gagatcatcctgtgtgatacctgtccccgagcctaccatatggtgtgcctggacccagac
atggagaaggcccccgagggcaagtggagctgcccacactgtgaaaaggaggggatccag
tgggaagctaaggaggacaattctgagggcgaggagattctggaagaagttgggggagac
ccagaagaggaagatgaccaccatatggaattctgtcgagtctgcaaggatggcggggag
cttctatgctgtgacacctgcccttcttcctaccatatccactgcctgaaccccccgctg
ccggagatcccaaatggcgaatggctctgtccccgctgtacttgtccagctcttaagggc
aaagtgcagaagatcctaatttggaagtggggccagccaccgtctcccacaccagtgcct
cggcctccagatgctgatcctaataccccatctcccaaacctttggaggggcggccggag
aggcagttctttgtgaaatggcaaggcatgtcttactggcactgctcctgggtgtcagaa
ctgcagttggagctgcactgtcaggtgatgttcagaaactaccagcggaagaatgatatg
gatgagccgccttctggggactttggtggagatgaagagaagagccgaaagcgaaagaac
aaggaccctaagtttgcagagatggaggagcgcttctatcgctatggaataaaaccggag
tggatgatgatccaccgaatcctcaaccacagtgtggacaagaagggccacgttcactat
ttaatcaagtggcgagacttaccctacgatcaggcatcttgggagagtgaggatgtggag
atacaggactatgacctgttcaagcagagctactggaaccacagggagttaatgaggggt
gaggaaggacgacccggcaaaaagcttaagaaggtgaagctacggaaactggaaaggcct
ccggagaccccaactgttgatcccacagtgaagtatgagcgccagccagagtacctggat
gccacaggtggcactctgcacccctaccagatggaaggcttgaactggctgcgcttctcc
tgggctcagggcaccgataccatcttggctgatgagatgggcctcgggaagaccgtgcag
acggccgtcttcctctactccctctacaaggagggtcactccaaaggccctttcttagtg
agtgctcctctgtccaccatcatcaactgggagcgagagtttgagatgtgggctcctgat
atgtacgtggtaacctatgtgggtgacaaggacagccgtgccatcatccgggaaaatgag
ttctcctttgaagacaatgcaattcgtggtggcaagaaggcctcccggatgaagaaagaa
gcgtctgtgaaattccatgttctgttgacatcctatgagttgatcaccattgatatggcc
atcctgggttctattgactgggcctgcctcattgtggatgaagcccaccggctgaagaac
aaccagtctaagttcttccgagttttgaatggttactcactccagcacaagctgttgcta
actggaactccattacaaaacaatctagaggagttgtttcacctgctcaactttctcacc
cctgagaggttccacaatttagaaggcttcttggaggagtttgcggacattgccaaagag
gaccagattaaaaagctacatgacatgctggggcctcacatgttgcggcgactcaaagct
gatgtcttcaagaatatgccatctaagacagagctgattgtgcgcgtggagttgagccct
atgcaaaagaagtactacaagtatattctcacgcggaatttcgaagcactcaatgctcga
ggtggcggcaaccaggtctccctcctgaacgtggtgatggatcttaagaagtgctgcaac
cacccttacctctttcccgtggcagccatggaagcccctaagatgcctaatggtatgtat
gatggcagtgccctgatcagagcatctgggaaattgttgctgctacagaagatgcttaag
aacctcaaagagggagggcaccgtgtgctcatcttctcccagatgaccaagatgctggac
ttgttagaggattttttagaacatgaaggttataaatatgaacgtattgatggtggaatc
actgggaacatgcgtcaggaggccattgatcgcttcaatgcaccgggtgctcaacagttc
tgcttcttgctttccacacgagctgggggccttggcatcaatctagccactgctgacaca
gttattatatatgactctgactggaacccccataatgacattcaggcttttagcagagcc
caccgtattgggcaaaataagaaggtgatgatctaccggtttgtgacccgtgcatcagtg
gaggagcgcatcacgcaggtggcaaagaagaagatgatgttgacacatttagtggtgcgg
cctggcctaggctccaagacaggctcgatgtccaaacaggagcttgatgatatcctcaaa
tttggcactgaggaactattcaaggatgaagccacggatggaggaggagacaacaaggag
ggagaagacagcagtgttatccattatgacgataaggccattgaacgactgctggatcga
aaccaggatgagaccgaagacacagaattacagggcatgaatgaatatttgagctcattc
aaagtggctcagtatgtggtacgggaagaagaaatgggggaggaagaggaggtagaacgg
gaaatcataaaacaggaagaaagtgtggatcctgactactgggagaaattgctgcggcac
cattatgagcagcagcaagaagatctagcccgaaatctgggcaaaggaaaaagaatccgt
aaacaggtcaactacaatgatggctcccaggaggaccgaggtgtgtgtggccggccccgc
cccccacccacgggccgatccactagagcagtgggccccgctcatctgccctctctccct
ccagattggcaggacgaccagtccgacaaccagtccgattactcagtggcctcagaggaa
ggtgatgaagactttgacgaacggtcagaagctccccgcaggcccagtcgcaagggtctg
cggaacgataaagataagccattacctcctctgctggcccgtgttggtgggaatattgaa
gtacttggttttaatgctcgtcagcgaaaagcatttcttaatgcaattatgcgatatggc
atgccacctcaggatgcttttaccactcagtggcttgtgagagatcttcgaggcaagtca
gagaaagaatttaaggcttatgtgtcactcttcatgcgacatttgtgtgagcctggggca
gatggggctgaaacttttgctgatggcgtcccccgagaaggcctgtctcgtcaacatgtt
cttactaggattggtgtcatgtctctgattcgaaagaaggttcaggagtttgaacatgtt
aatgggcgctggagcatgcccgaactggctgaagtagaggaaaacaaaaaaatgtctcag
ccaggttcaccctctccaaaaacgcctacaccttccacaccaggggacacacaacccaat
actcctgcgccggtgccgcctgctgaggatggggtaaaaatagaggaaaataacctgaaa
gaagaagagaacacagaaggagagaaggaagctaagcctgcagcccctgaggtgactgcg
gagtctgcacagctccctgcccctccccctgccccagcccctgcccctgaggatgacaag
gctcccgccgaggctcctgagggggaggaaaaagtggaaaaggcagaagcaaaggacaga
acagaggagcctatggagacagagcccaaaggtgctactgaggtggagaaagtggaggag
aagtctgcagtagacctgaccccaatcgtggtagaagacaaagaggagaagaaggaggaa
gaagagaaaaaggaggtgatgcttcagaatggagaaactcccaaggatcttagtgacgaa
aagcagaagaaaaacctcaaacagcgtttcatgttcaacattgcagatggtggcttcact
gagttgcactccctgtggcagaatgaggagcgggcagccacggtcactaagaagacttac
gagatctggcaccgccgccatgactactggctgctggctggcattataaaccatggctat
gcccggtggcaggacatccagaatgacccacggtatgccatcctcaatgagcctttcaag
ggtgaaatgaatcgtggcaattttctagagatcaagaataaatttctagctcgaagattc
aagctcttagaacaagccctggtgatcgaggagcagcttcgcagggcggcatacctgaac
atgtcagaggacccctctcacccgtctatggcccttaacacccgctttgctgaggtggag
tgtttggcagaaagtcaccagcacctgtccaaggagtcgatggcaggaaataagccagcc
aatgcagtcctacacaaagtcctgaaacagctggaggaactgttaagtgacatgaaagct
gatgtgacgcggctcccagccaccattgcccgcattcccccagttgctgtgaggttacag
atgtcagagcggaacattctcagccgcctggcaaacagggcgccagaacctcccccacag
caggtagcccagcagcagtga
DBGET
integrated database retrieval system
