Mastomys coucha (southern multimammate mouse): 116101732
Help
Entry
116101732 CDS
T07224
Symbol
Sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03015
mRNA surveillance pathway
mcoc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116101732 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116101732 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116101732 (Sympk)
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116101732 (Sympk)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116101732 (Sympk)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116101732 (Sympk)
U7-dependent histone pre-mRNA processing factors
116101732 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
116101732
NCBI-ProteinID:
XP_031241370
LinkDB
All DBs
Position
Unknown
AA seq
1363 aa
AA seq
DB search
MALEGRKWRLPRWTPGEVGRLPTRHALGAGTGRGAGLHFPAALLVQRLRCVTAAGGRWRR
QQRLWRGAAEGARGARRPEPRDNLTAVMASGSGDSVTRRSVASQFFTQEEGPGIDGMTTS
ERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVI
GFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISDL
QEACWDMVSSMAGEIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQEHDISL
DRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSE
VIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQT
EIARNMPSSKDSRKRSRDDTDSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQS
DTDITAEFLQPLLTPDNVANLVLISMVYLPETMPASFQAIYTPVESAGTEAQIKHLARLM
ATQMTAAGLGPGVEQTKQCKEEPKEEKVVKPESVLIKRRLSVQGQAISVVGSQSTMSSLE
EEVPQAKRRPEPIIPVTQPRLAGAGGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAE
KAVACSGAAQVRIKILASLVTQFDSGFKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAA
GASGTLDKYEDCLICLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRAY
LGMSTLGDLIFKRPSRQFQYLHVLLDLSSHDKDRVRSQALLFIKRMYEKEQLREYVEKFA
LNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYT
EAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPEL
VKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEG
NSALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSP
LPMLLMRTVIQSLTMYPRLGGFVMNILARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVI
LQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILEASGKQEPDVKEASS
GPLEEDDLEPLPLALVPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKQKPTGVGTPAASV
SSTPSVAPAARAGPTPAEEVMEYREEGPECETPAIFISMDDDSGLAETTLLDSSLEGPLP
KEAAAVGPSSKDERSPQNLSHAVEEALKTSSPESREPESKGNS
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaggccggaaatggcggctgccccggtggacgcccggggaggtcgggcgg
ctgccgacgcggcacgccttaggggcggggacgggccgcggtgcgggactccatttcccg
gcggccctactagtgcagcgcctgcgctgtgtcacggcggcgggcggaagatggcggcgg
cagcagcgtctgtggagaggcgctgctgagggggcgcgaggggcacggaggccggagccg
cgggacaacctgacagcagtaatggcaagtggcagcggggacagtgtcacccgccggagt
gtggcatcacagtttttcacacaagaagaagggccaggcattgatggcatgaccacttct
gagagggtggtagatctcctgaaccaggctgcattgatcaccaatgactcaaagatcaca
gtgctcaaacaggtccaagagctgatcatcaacaaggaccccaccctgcttgacaacttc
ttggacgagatcatcgctttccaggcagacaagtccatcgaagtgcgcaagtttgtcatt
ggcttcatcgaggaggcatgcaagcgggacattgaactgctgctaaaactgatagccaac
ctcaacatgctattgcgggatgaaaatgtgaacgtggtaaagaaggccatcctcaccatg
actcagctctacaaagtagccctgcagtggatggtgaagtctcgggtcatcagtgatctc
caggaggcatgctgggacatggtatcctccatggctggggaaatcatcctgcttttggat
tctgacaacgatggcatccgtacgcatgccatcaagtttgtggagggcctcattgtcacc
ttgtcaccccgaatggctgactcagaggttccccgacgccaggagcatgacatcagtctg
gaccgcatccctcgagatcacccctacatccagtacaatgtcctatgggaagaaggcaag
gcagctctggagcagctgctgaaattcatggtacaccccgccatctcctccatcaacctg
acgacagcactgggctcccttgccaacatcgcccgccagagacccatgtttatgtctgag
gtgatccaggcctatgagacgctgcatgccaatctgccccctacactggccaagtcccag
gtgagcagtgtgcgtaagaacctcaagctgcacttgctgagcgtgctcaagcaccctgcc
tccttggagttccaggcccagatcaccaccctgctggtggacctgggcacaccccagact
gagatcgcccgtaacatgcctagcagcaaggactcccgcaagcggtcccgggatgataca
gattccacgctcaagaagatgaagctggagcccaatttgggagaagatgatgaggacaaa
gacttggagcctggcccatcagggacgtcaaaggcctcagcccagatctcaggccagtca
gatacggacatcactgctgagttcttgcagcctctgctgacacctgacaatgtggctaat
ctggtcctcatcagcatggtgtacctgcctgagaccatgcctgcctccttccaagccatc
tacacccctgtggagtcagcaggcactgaagcccagatcaagcacctggctcgtctcatg
gcgacacagatgacagctgcaggactgggtcctggtgtggaacagacgaaacaatgcaag
gaggagcccaaggaggagaaggtggtaaaaccggagagtgtcctgatcaagcggcgccta
tcagtgcagggccaggccatctctgtggtgggctctcagagcaccatgtcttccttggag
gaggaggtacctcaggccaagaggaggccagaacccatcatccctgtcacgcagccacgg
ctggcaggtgccggtgggcgcaagaagatcttccgtctgagcgatgtgctgaagcccctg
acagatgcccaggtggaagccatgaagctaggagctgtgaagcggatcctgagggctgag
aaggctgtagcctgcagtggggctgcccaggtgcgcatcaagatcctggccagcctcgtg
acacagttcgactccggattcaaggcagaggtgctgtcctttatactggaagatgtccgg
gcccgtctggacctggcttttgcctggctctaccaggaatataatgcctacctggcagca
ggggcctctggcactctggacaagtatgaggactgcctcatttgcctgctttctggactg
caagagaaaccggaccagaaagatgggatctttaccaaggtggttttggaggccccactg
atcactgagagtgccttggaggtgatacggaagtactgtgaggatgagagtcgcgcctac
ctgggcatgtcaacacttggagacctgatcttcaagcgcccttctcgccagttccagtat
ctgcatgttctccttgacctcagctctcacgacaaggacagggtgcgctcccaggccctg
ctcttcattaagcgcatgtatgagaaggagcagcttcgagagtatgtggagaaatttgcc
ctcaactacctgcagctcctggtccaccccaacccaccctccgtgctgttcggagccgac
aaggacacagaggtggccgcgccctggacagaggaaacagtgaagcagtgtttgtatctg
tatctggctctcctgcctcagaaccacaaactgatccatgagcttgcagccgtgtacact
gaggccatcgctgacatcaagcggacagtgctgagggtcattgagcagccgatccgaggg
atgggtatgaactcaccagagctgctactgctggtagaaaactgtcccaagggggcagag
acgctggttacccgctgcctgcacagcctcactgacaaagtgccaccatccccagaactg
gtgaagcgggtccgagacctgtaccacaagcggctgcctgacgtgcgcttcctcatccct
gtgctcaacgggctggagaagaaagaggtgatccaggccctgcccaagctcatcaaactc
aaccccatcgtggtgaaggaagtcttcaaccgcctgctaggtacccagcacggtgagggg
aactcagccctgtcccccctgaatccgggagagctgctgatcgcattgcacaacattgac
tctgtgaagtgtgacatgaagtccatcatcaaagccaccaacctgtgttttgcggagcgg
aatgtgtacacgtcggaagtgctagctgtggtgatgcagcagctgatggagcaaagtcct
ctgcccatgctgctcatgcggaccgtcatccagtccctcaccatgtacccccgcctaggg
ggcttcgtcatgaacatcctggcccgactcatcatgaagcaggtgtggaagtaccccaag
gtatgggagggcttcatcaagtgctgccagcgcaccaagccccagagtttccaggtcatc
ctgcagctacctccacagcagcttggcgcagtctttgacaagtgccctgagctccgggag
ccactgttggcccatgtgcgctccttcaccccccaccagcaagcacacatccccaactcc
attatgaccatcctggaggccagtggcaagcaggagcctgatgtcaaggaagcatcttca
gggcccctggaagaggatgacctggagcccttgcctctggctttggtcccggcccctgcc
ccacggccccctcaggacctcattggtctgcgattggctcaggagaaggccctgaagcgg
cagctggaggaggaacagaaacagaagcccacaggcgtcggaacgcccgctgcctctgtg
tcctcgacgccctcggttgctccagcagcccgagctggtcccaccccagctgaggaggtc
atggaataccgggaggaaggtcctgaatgcgagaccccagccatcttcatcagcatggac
gacgactcggggctggctgaaaccacactcctggactctagtctcgaggggcccctacct
aaggaggcagcagcagtcgggccgagctccaaggatgagcggagccctcagaacctcagc
catgctgtggaagaagccttgaagacctccagcccagagtccagggaacccgagagcaag
gggaacagctga
DBGET
integrated database retrieval system
