Mastomys coucha (southern multimammate mouse): 116102568
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Entry
116102568 CDS
T07224
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116102568 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116102568 (Pcf11)
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116102568 (Pcf11)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116102568 (Pcf11)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116102568 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
116102568
NCBI-ProteinID:
XP_031243231
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVV
SSPNISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVPQIPTMAVKTPHQVPVQPDKSRVGPSLQMQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTINQSDLKTSKNVPSEKLNSSKQEKNKSGERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMSKRDPRLKKHLQDKAEGKDEDV
KEKRKTAEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMEEFPPSSR
EERNIKRSAKQDVRDPRRLKKMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPKEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGGGIRFEGPL
LQQGVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPIVQQGGGMRF
EGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRIDSFNQS
GPYNDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRASGHYFDE
KNLPSSQFGNFGNLPTPISVGNIQASQQVLTGVAQPVPFGQGQQFLPVHPQNPGTFIQNP
SGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAIAQPPPEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATSTEIKTESDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggcggaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttccagttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acgtgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgcctcctaatgtgaatacatctagcatccat
gtaaatcccaaatttttaaataaatcgcctgatgagccttcaacacctggcacagtggtc
agttcccccaatatctccactcctcccattgtacctgatatacaaaagaatcttacccaa
gaacaactaataaggcaacagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctctgagtgtt
cagcaggagacagccaacttgggtcctggatcagcgccatctaaattacatgttccacaa
attcccactatggctgttaaaactccccatcaggtccctgtacaacctgacaaaagccga
gtgggtccgtccttacaaatgcaagacttgaaaggaactaaccgggatccccgtcttaac
aggatgagccaacattcttcccatggcaaagagcagagtcataggaaagaatttgtaatg
aacacaataaaccagtctgatcttaagacaagtaagaatgtaccctctgaaaagctaaat
tcatccaagcaagaaaaaaataaatcaggtgaaagaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattgtcc
cacacaaaagacttgaaaaatcaagaatctgaaagtatgaggttgtctgatatgagtaag
agagatccacgattaaagaaacatcttcaggataaagctgagggcaaagatgaagatgta
aaagaaaagagaaaaactgcagaaaagaaggataaagatgagcacatgaaatcatctgaa
cacaggctgattggaagtagaagtaaaatcataaatggtattgtccaaaaacaagatatg
gttacagaagaactggaaaaacaggggacaaaaccaggcagatcaagtactagaaagaga
tccagatcaaggtcacctaaatctcggtcaccaattatacattccccaaagagaagagat
agaaggtcacccaaacgaaggcaaagaagtatgtctcccactttggcacccaaagctgga
aagatgcgtcagtcgggacttaaacagtcacatatggaagaattcccaccatcatctagg
gaagaaagaaatattaagagaagtgctaagcaggatgtccgagatcccagacgactgaaa
aagatggatgaggaccggcctcaagaaactgcaggtcaacattctatgaagtcaggtggt
gacccaaaggagaatatagagaattggcaaagctctaaatctgccaaaagatggaaatct
ggttgggaagaaaataaaagcttacagcagggtgatgaacatagtaaacctcctcatcta
aggcatagggagagctggtcaagcactaaagggatcttgtcacctcgagctccaaagcag
cagcatcggttaagtgtagatgccaatcttcaaattcctaaagagttaacgcttgcaagc
aaaagagaattacttcagaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctaaagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaggagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagactcagataaaccatttgtagatggccca
gcatcaagatttgctggccttgatacaaatcagcgacttacagctctggctgaagaccgg
ccattatttgatggacctggtaggccatctgtgactagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctatgagatttgaaggacca
caaggtcagttaggaggtgggtgtcctttgaggtttgaaggtcctccaggaccagtagga
acacctctgcggtttgaagggccaattggtcaaggaggaggaggaggttttcgatttgaa
ggttcacctagtctgaggtttgagggatctgcaggtggtttacgatttgaaggaccagga
ggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtgggtggtctc
aggtttgagggacctcatggacagcctgttggcagtcttagatttgataatcctcgaggt
cagcctgttggaggacttagatttgaagggggtcatgggccatcaggggctgcaattagg
tttgatgggcctcacggtcagccaggtggtggtggtggtatcagatttgagggccctttg
ctacagcaaggagttggaatgaggtttgagggtccccatggtcagtctgtagctggtttg
agatttgaaggacataatcaactaggtgggaaccttaggtttgagggaccacatggtcaa
ccaggtgttgggattaggtttgaaggacctatagttcaacaaggaggtggaatgaggttt
gaaggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcct
agatttgaaggttgtcactctttaaggtttgatggacagccaggtcagccatcacttttg
ccaagatttgatggattacatggccagccaggtcctcgatttgaaagaactggtcagcca
ggtccacagagatttgatgggccacctggacagcaggttcaaccgagatttgatggtgta
cctcaacgatttgatggaccacaacaccagcaagcatcaagatttgatattcctcttggt
ctacaaggaactcgatttgacaatcatccttcacaaaggattgactctttcaatcagtct
ggcccatataatgatccacctggcaatgcttttaatgtcccatctcaaggattacagttc
caaagacatgaacaaatatttgatacacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagaatttcccaaatcccattaacagagcttctggacactattttgatgaa
aagaatcttccgagttctcagtttggaaactttggcaatttgcccacaccaatatcagta
ggaaatattcaggcatctcaacaggttctgactggtgttgctcagcccgtaccgtttggc
caaggacaacagtttttaccagttcatccacagaatcctggtacttttattcaaaatcct
tcaggtggtcttcctaaggcatatcctgataatcatcttagtcaggtggatgtaaatgaa
ttgttttcaaaactgctaaaaacaggaattctcaaattgtcacagcctgattcagctaca
gcacaggtaaatgaggctattgctcagcctccccctgaagaggaggaggatcagaatgaa
gatcaagatgttccagatcttactaatttcacaattgaagaattgaagcaacgttatgac
agtgttataaaccggctgtacactgggattcagtgttactcttgtggaatgaggtttaca
acatcccagacagatgtttatgcagatcacttggactggcattatcggcaaaatagaact
gagaaagatgttagcagaaaagtcactcatagacgttggtactacagtctaacagattgg
atagaatttgaagaaatagctgatctggaagaacgtgcaaaaagccagttttttgaaaag
gttcatgaagaggttgtccttaaaactcaggaggctgctaaagaaaaggagttccaaagt
gtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
cagtactgggatgaagaggaggaagaatggcacttaaaaaatgctattagagtagatgga
aagatttaccatccatcatgttatgaagattatcaaaatacatcttcatttgattgtaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aacgaattgcaagaaccctgtgaaagtcccaaagttaaggaagaacaaattgatgctcca
ccagcttgttcagaagaaagtgtagcaacatccactgaaattaaaacagaaagtgataca
gttgagtcagtttaa
DBGET
integrated database retrieval system
