Mastomys coucha (southern multimammate mouse): 116102913
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Entry
116102913 CDS
T07224
Symbol
Palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03440
Homologous recombination
mcoc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116102913 (Palb2)
03460 Fanconi anemia pathway
116102913 (Palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116102913 (Palb2)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
116102913 (Palb2)
FA (Fanconi anemia) pathway
Downstream FA components
116102913 (Palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
116102913
NCBI-ProteinID:
XP_031244031
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MEELSGKPLSCAEKEKLKEKLAFLKKEYSKTLARLQRAKRAEKVKNSKKAIEDCVPQQEV
SPLLNHSEPINKGFTCDTLQSDYLDEETGESSSQILDIESQSLNCKSGQEVLHTPRAGDI
QGQFLHSTSSPDGEKGQNTLPGTAKMPWTKSSVSLGKEDFFNTNSLTLPGKHGKRQEAVS
SRSPRAPVSEKTHLLSLKSQTPDPPALVTGIGESILILPSGKSERGIETPVGGNNVSMET
TVPSCTVSNSNYCRHLEHTPPDSSCKITTQGPASSINLVAQDKKTTIFTDNSVYKAVSAN
DQLPGSPNSCSVNDLTLSKLPANTTQNSKSLKSPSNIIDVRNENLQEDEILGSSKNLSPA
AVSPPSTESQIHSCTMLEGLLFPAEYYVRTTRRMSDSQRKIALEAVIQCHLGVKKKELKK
KKATKDVVLSSEETDPSESGMLDTSTGKLSSGSLSQKLLSAAEVSSPPGPADNRPARPPG
RGHRGKRKSVRTSTLDHCQLLFPPCVALAVNRSKGKFTKHKCQNRELIIHDFELPDEDFG
FLKLEKLKSYSEKLIESPDSKNCGERLPREGIRSALEALQIDSETEGLEEELTVLPGEAC
HPGPTLRRQPGSKGLSSSIVLFTPTDTAAPNHSGRPTPSLCSPAFPVLGMTPAFGSPATG
GNLSTEAAQPCSTPQPSLLGDTNSLVNNSKECNNSACSPKPDTNLQVSGRQGQPACDSDS
GPQATPLPVEPFTFRENQLCGNACLELHEHSTEQTETADLPACDSLNPGSLQLVSELKNP
SSSCSVDVSAMWWERAGTKEPCIITACEDVVSLWKPLNSLQWEKAHTWHFTEVPVLQIVP
VPDVYNLICVALGSLEIREIRALLCSSGDENEKQVLLKSGDIKSILGLTKRRLVSSTGTF
CNQRIQIMTFAEDGSSTDEQLLMPPDETVLTFAEVQGTQDALLGTTTVNSIVIWNLKTGQ
LLKKMHIDDAYQASICHRACSEMGLLFVVLSHPCAKESQAFGSPVFQLLVINPKTAQSVG
IVLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLVKW
SGTGSHLLAGQKDGNIFIYRYF
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctttccgggaagcccctcagctgtgcggagaaggaaaagttgaaagaaaag
ctagcatttttgaaaaaggaatatagcaagacacttgctcgccttcagcgtgccaaaaga
gctgagaaggttaagaactctaagaaagcaatagaagattgtgtaccccagcaggaagtc
tccccactgttaaaccactctgaacctataaataaaggctttacttgtgacacattacaa
agcgactatctcgatgaggagactggagaaagcagctctcagatacttgatattgaatct
cagtccttgaattgtaaaagtggccaagaagtattacatacaccaagagcaggtgacatc
caaggacaatttttgcatagcaccagcagccctgatggtgagaaaggacagaatacactt
ccagggacagcaaagatgccgtggacgaaatcatctgtgtcactggggaaggaagatttt
tttaacactaattctcttacactccctggcaagcatggaaaaagacaggaagcagtcagt
agcaggagtcctagggctccagtaagtgaaaagactcaccttttaagtctgaagtctcaa
actcctgaccctccagcacttgttacaggtattggagagagtatattaattctaccatct
ggcaaatcagaaaggggtattgagacacctgtgggaggaaataatgtctctatggagact
acagttccttcatgtactgtgtcaaacagcaattattgtcggcaccttgagcatacacct
cctgacagtagctgcaaaattactacacagggcccggcttcatccataaacctggtggca
caagacaaaaaaacgactatatttacagataactcagtatataaagctgtgagtgccaat
gatcagctgccaggaagtcctaattcatgttctgtaaatgatctcactcttagtaagttg
ccagcaaatactacccaaaactctaaatctttaaaatctcccagtaacattattgatgtg
agaaatgagaatcttcaggaagatgaaattcttggctcatctaagaacctcagcccagca
gcagtctctcctccttccacagaaagtcaaatacattcttgtactatgcttgaaggcctt
ctgtttcctgcagaatactatgttagaacaacccgtcgcatgtctgattctcagagaaaa
atagctctggaagctgtaattcaatgtcatttgggtgtcaaaaaaaaagagcttaaaaag
aagaaagcaactaaggacgtagtcctctccagtgaagaaactgacccaagtgaaagtggc
atgctagacacgagcacaggaaagttgagttcaggaagcctctctcagaaacttctctca
gcagctgaggtcagctctcctccaggacctgctgacaaccgacctgcacggccacctggt
agaggacacagagggaaacgaaaatcagtccgcacctccacactggatcactgtcagctg
ctttttcctccctgtgtcgcattggctgttaacaggtccaagggcaaattcaccaagcat
aagtgtcagaacagagaattgattattcatgactttgagttacccgatgaagactttggg
tttcttaaacttgaaaaattgaagtcctactcagaaaaactgattgagtctcctgactca
aaaaactgcggtgagagacttcctagagaaggaatccgttctgctctggaagcactgcaa
atagattcggagacagagggcttggaagaggagctcactgttctgccaggagaagcatgc
catccagggccaaccctgagaaggcagccggggagcaagggcctttcttcatccatagtg
cttttcactcctacagacactgctgcacctaatcacagtggcaggcctactccctccctg
tgttcacctgctttccctgtcttaggcatgactccagcttttggctccccagcaaccggt
ggtaatctgtctactgaagctgcacagccttgctctacaccccaaccttctctcttggga
gacacaaacagccttgttaataacagtaaagagtgcaacaattcagcctgctcaccaaaa
ccggataccaacctgcaagtgtcaggtaggcaaggacaacctgcctgtgacagtgactct
ggcccccaagcaacacctctgcctgttgagccattcactttcagagaaaatcagctttgt
ggaaatgcatgcctcgagttacatgaacattccactgaacagactgaaactgcagacctc
cctgcttgtgacagtttaaacccaggcagcctacagttggtttcagagttaaagaatcct
tccagttcctgctctgtggatgtgagcgccatgtggtgggaaagagctggtactaaggag
ccatgtatcataactgcttgtgaagatgtagtttctctttggaaacccttgaattctttg
cagtgggaaaaagctcatacctggcacttcacagaggttccagtattacaaatagttcca
gtgcccgatgtttacaatcttatatgtgtagctttgggaagtttggaaatcagagaaatc
agggcgttgctgtgttcctctggtgatgaaaatgaaaagcaagtcctcctgaaatctgga
gatataaaatctatacttggcctaacaaagaggagactagttagtagcactggaaccttt
tgcaatcagcgaatacaaatcatgacatttgctgaagatggaagcagcacagatgagcag
cttttgatgcctcccgatgaaactgtactgacttttgctgaagtccaggggacgcaggac
gctctgcttggtactaccactgtgaacagcattgtgatctggaatttaaaaactggccag
ctcctgaaaaagatgcacattgatgatgcttaccaagcttccatctgtcacagagcctgt
tctgagatggggctcctgtttgttgttctgagtcatccttgtgccaaagagagccaggcc
tttggaagccctgtgtttcagctgctggtgattaaccctaagacagctcagagtgtgggt
attgtgctgtgctcccttcctcagggacaggctggaaggttcctggaaggggatgtgaaa
gatcatgtcgcagcagcagtgctgacttctgggacaattgccatttgggatttgcttctg
ggtcactgcacagctctcctcccacctgtctctgaccagagttggtctttggttaaatgg
tcgggtacaggttcccatttgctagctgggcaaaaggatggaaatatatttatataccgc
tacttttaa
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integrated database retrieval system
