Mastomys coucha (southern multimammate mouse): 116102953
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Entry
116102953 CDS
T07224
Symbol
Atxn2l
Name
(RefSeq) ataxin-2-like protein isoform X1
KO
K23625
ataxin 2/2L
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc05014
Amyotrophic lateral sclerosis
mcoc05017
Spinocerebellar ataxia
mcoc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116102953 (Atxn2l)
05017 Spinocerebellar ataxia
116102953 (Atxn2l)
05022 Pathways of neurodegeneration - multiple diseases
116102953 (Atxn2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116102953 (Atxn2l)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116102953 (Atxn2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
DUF5415
Motif
Other DBs
NCBI-GeneID:
116102953
NCBI-ProteinID:
XP_031244107
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLPATVAPPGPPAAVSPCLG
PAAAAGSGLRRGAESILATPAPPQHQERPGAVAIGSVRGQTTGKGPPQSPVFEGVYNNSR
MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDT
MVFKPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYD
LESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLARE
IESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRG
GVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTL
SSPNSRPSGEASAPPTSAALPFLPVGRMYPPRSPKSAAPAPVSASCPEPPIGSAVASSAS
IPVTSSVVDTGAGCISPASPKLSLAPTDVKELPTKEPSRSLEAQELARIAGKVPGLQNEQ
KRFQLEELRKFGAQFKLQSSSSPETGLDPFPSRILKEEAKGKEKEVDGLLTTDPMGSPVS
SKTESILDKEDKVPLAAVGGTEGPEPLPAPCPSQTGSPPVGLIKGDDKEEGPVPEQVKKS
TLNPNAKEFNPAKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQI
HMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAAA
AGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQA
IVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSP
VQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQ
LPHGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPA
LSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVLCFPPS
SLSCDPAAPLPTASPALSDPDCLLT
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctcccaaccccagcagccgccccccacgcaa
caagccgtggctcgccggcctcccggcggcaccagccctcccaacggcggcctccccgga
ccgctgcccgccaccgtggctcccccggggcctcccgcagcggtctccccatgcctaggg
cctgcagccgctgccggcagcgggctccgtcgcggagccgaaagcatcttagcgacgcca
gcgccgccgcagcatcaagaaaggccaggggctgtggctatcggcagcgtcaggggacag
accaccggaaagggacccccacagtcacccgtgtttgaaggtgtctacaacaattccagg
atgctgcatttcctgacagctgtagtgggttctacttgtgatgtaaaggtgaaaaatggc
accacttacgagggcatattcaagactctgagctcaaagttcgaactggcagtagacgca
gtacatcggaaagcatctgagccagcaggtgggcctcgtcgggaggacattgtggacacc
atggtgtttaaaccaagtgatgttctgcttgtccacttccgaaatgttgacttcaattat
gcgactaaagacaagttcactgactcagccattgccatgaactctaaggtgaatggagaa
cacaaagagaaggtgcttcagcgttgggagggcggtgatagcaacagtgatgactatgat
ctggaatctgatatgtccaatggatgggatcccaatgagatgttcaaatttaatgaggag
aactatggagtaaagaccacctatgacagcagtctatcttcttacacggttcccttagaa
aaggacaactctgaagagtttcggcagcgggagcttcgagcggcccagttggctcgagag
attgagtctagtccccagtaccgtttacggatagctatggaaaatgacgatgggcgaaca
gaggaggagaagcacagcgcagttcagcggcaggggtctggtcgggagagccccagcttg
gtatccagggaggggaaatatatccctctgcctcagcgagttcgagaaggtccccgggga
ggagttcgatgcagcagttctcgaggagggcggcctggccttagctctttgccacctcgt
ggccctcaccatcttgacaacagcagtcctggccctgggtctgaggcacgtggtatcaat
ggaggtccttcccgcatgtcccccaaggcacagcggcctctaagaggtgccaagacctta
tcttcacccaacagtaggccttctggagaagcgtctgcccctccgacatccgcagctctc
ccttttcttccagtgggccggatgtaccctccacggtctcccaagtctgctgctcctgcc
ccagtctcagcttcctgtcctgagcctcccattggttcagcagtggcatcctctgcctcc
atccctgtgacatcatcagttgtggatactggtgcaggctgtatttccccggcatctcca
aaactctccctggcccctacagatgtaaaagaactcccaaccaaggaacccagtagaagt
ttggaagcccaagagctggcccgcatagctgggaaagtccctggccttcagaatgaacaa
aaacgatttcagttggaagaactgagaaaatttggggcccagtttaagcttcaatctagt
agctcccctgagacgggcctggatccatttccttcccggatcttgaaagaagaggccaaa
ggaaaggagaaagaagtggatggcctattgactacagatcccatgggatccccagtctcc
tccaagacagaatccatattggataaggaagacaaagtgcccctggcagcagtgggaggg
actgaggggccagagcctctcccagcgccttgccccagccaaactggcagtcctccagtg
ggcctcatcaagggagatgacaaagaggagggccctgttcctgaacaagtaaagaagtct
actttgaaccctaatgccaaggagttcaatccagcaaagcctctgctgtctgtgaacaaa
tctaccagtactccaacttcaccagggccccgtactcattcaacaccttctataccggtg
ctgacagcaggccagagtgggctctacagtccccagtacatctcatatatacctcagatc
cacatgggaccagctgtacaggcacctcagatgtatccatatcctgtatccaattcggtg
cctgggcagcagggcaagtaccggggtgcaaaaggctcacttccccctcagcgctctgac
cagcaccaaccagcctcggcccctccgatgatgcaggctgctgctgctgccgccgctgct
gctggcccacccctggtggctgccacaccttactcctcctatatcccctacaacccacag
cagttcccaggccagcctgccatgatgcagcccatggcacactacccttcacagccggtg
ttcgcccctatgcttcaaagtaatccccgaatgttgacatcgggaagccatccccaggcc
atcgtgtcatcctctactcctcagtacccttctgcagagcagcctaccccccaagccctc
tatgccactgttcaccaatcctatccacaccatgccacgcagctccatggccaccagccg
cagccggccaccacacccactgggagccagccacaatcccagcatgcggcccccagtccc
gttcagcaccaggcggggcaggcccctcacctgggcagtggacagccacagcagaatctg
taccatccaggggccctaacaggcacgccaccttctctaccaccgggaccttctgcccag
tcccctcaaagcagcttcccccagccagctgctgtgtatgccatccatccccaccagcag
ctgccccacggcttcaccaacatggcccatgttacccaggcccatgtccaaactggagtc
acagcagccccgcccccacaccctggggctccccacccgccccaggtgatgctgctgcac
cccccccagggccatgggggccccccccaaggcgcggtgcccccgagtggggtgcctgca
ctctcagcttccacaccctcaccctacccctacatcggacacccccaaggtgagcagcct
ggccaggcgcctggatttccaggaggagccgatgacaggattctatgtagggtgggcaga
agccacagtcgccgccgccaggggcttgctcctggctctgtcctttgcttccctccgtcc
tcgctcagttgtgatccagcagcccccctccccactgcctccccagctctcagtgacccc
gactgtctcctgacttag
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