Mastomys coucha (southern multimammate mouse): 116103600
Help
Entry
116103600 CDS
T07224
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116103600 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116103600 (Patl1)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116103600 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
116103600 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
116103600
NCBI-ProteinID:
XP_031245654
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVDEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRPDTTHLHPQ
HRRLLHQRQLQSRNQHRNLNGTGDRGGHRTSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSASAPAPSSSHLTAVLQNKFGLSLLLILLSRGEDIQSSDPAIESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgtggcagttgatgaacaaacaggcaatggagagagagatgagatggacttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtgcagaccaggccagttttacaacctcaaccgggaagt
ctgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccactactt
gctcaggaaatgcctacagtgtctgtattagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgggacctttctgagcgagctttaccaaggcggtcaacatcacct
atcattggaagtcctcctgttagagccgttcctataggcaccccacctaaacagatggct
gttcccagcttcaaccaacagattctgtgtccgaagcctgttcatgttcggcccccaatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcctctctcctgggccacccttttcctcctaatgttcctcctgtactcagtccc
ctgcagagagcacagcttcttgggggagcacagctgcagcctggacgaatgtctcccagc
cagtttgcacgggtccctggatttgttggtagcccactggctgccatgaatcctaagttg
ctacaagggcgcgttgggcagatgcttcccccagcaccaagcttccgtgccttctttagt
gctccaccccccgctacaccacctccacagcagcatcctcctggcccaggacctcaccta
caaaacctaagacctcaggctccaatgtttagaccagacacaactcaccttcatccacag
caccggcgcctgttgcatcagaggcagctgcagagtagaaatcagcatcggaatctcaat
ggtactggagacagaggaggtcaccggaccagtcatcaagatcatctccggaaggatcca
tatgctaatctaatgttgcagcgggaaaaggattgggtctctaaaatacagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaagaaatacaaggtgatggccctaagaaggaacgtaccaag
ctcatcacccctcaggtggccaaactggagcatgcttataaacctgtgcagtttgagggc
tctttggggaagcttactgtctctagcgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcggagtgaggatgatgaaacaaaagaaaaacaagttcgggataagagaaga
aaaacccttgtcataattgagaaaacctacagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagaacggcctgccctgatggatgaaagaaagcac
aaaatctgtagcatgtatgacaaccttaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattctcatggcaactgccagaaacctc
cctttccttatcaagaaggatgcacaagatgaggtgctgccgtgcttactgagtcccttc
tctctcctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcagagtgcaagtgcaccagcaccctccagttcccacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctactaagtcgtggggaagacatacaa
agttcagatcctgctatagaatcaacgcaaaataaccagtggacagaggtgatgttcatg
gcaacccgagaacttctacggatcccccaagcagccctggccaagccaatctctatcccc
acaaatctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactgcagctggttcaggggatacggtaa
DBGET
integrated database retrieval system
