Mastomys coucha (southern multimammate mouse): 116103693
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Entry
116103693 CDS
T07224
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03082
ATP-dependent chromatin remodeling
mcoc04714
Thermogenesis
mcoc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116103693 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116103693 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116103693 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcoc03021
]
116103693 (Smarca2)
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116103693 (Smarca2)
Transcription machinery [BR:
mcoc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116103693 (Smarca2)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116103693 (Smarca2)
Chromatin remodeling factors
BAF complex
116103693 (Smarca2)
PBAF complex
116103693 (Smarca2)
GBAF(ncBAF) complex
116103693 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116103693
NCBI-ProteinID:
XP_031245864
LinkDB
All DBs
Position
Unknown
AA seq
1600 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMSTM
GSADFPQEGMHQLHKPMDGIHEKGIEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGYM
SPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGTLIPGDLQAMNQPNRGPSPFSPVQLHQ
LRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQPPPQQPQQQQQPPQQQQ
QPQQAQQQAQAQSQQQQQQQQPALVSYNRPSGPGQELLLSGQSTPQKLAAPAPNGRPSPA
PPAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRL
QARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETAL
NSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVA
GKIQKLSKAVATWHANTEREQKRETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLL
QQTDEYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEENAEGGEPALGPDGEPIDESSQM
SDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEEE
SNRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISE
RVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK
RLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY
EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE
LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL
KKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIM
QLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVL
LFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGG
LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY
KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEF
DLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQ
RRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGR
PPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNSSGRQLSEVFIQL
PSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYE
DSIVLQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRD
TGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTDNE
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacagacccagctgcaatgccccatcctgggccttccccggggcctgga
ccctctcctggaccaattctggggcctagtcctggaccaggaccatccccaggttctgta
cacagcatgatgggtcctagtcctggacctcccagtgtctcacatcctatgtcaacgatg
ggctctgcagacttcccacaggaaggcatgcaccaattgcataagcccatggatgggata
catgagaaggggattgaagatgtccactgtggatccatgaagggcaccagcatgcgccca
ccacacccaggaatgggccctccgcagagtcccatggatcagcacagccaaggttatatg
tcaccacacccgtctcctctgggagccccagaacacgtctccagccctatatctggagga
ggcccaaccccaccccagatgccgccaagtcagccagggacactcatcccaggagatctg
caggccatgaaccagcctaaccgaggtccctcgcctttcagtcctgtacagctgcatcag
cttcgagctcagattttagcttacaaaatgttggccaggggccagcctctccctgaaact
ctgcagcttgcagtccaggggaaaaggaccttacctggtatgcagcagcagcaacaacag
cagcagcagccgccgccgcagcagccgcagcaacaacagcagccgccgcagcaacagcag
cagccccagcaggctcagcagcaggcacaggcacagtcccagcagcagcaacagcagcag
cagccagctcttgttagctacaaccgaccatctggccccgggcaggagctgctgctgagt
ggccagagcaccccccagaagctggctgcaccggcacccaacggcagaccttcacccgca
cccccagccgccgttcagcccacggccacagctgtgcctgggccctccgtgcagcagccc
gccccagggcagccttctccagtccttcagctgcaacagaagcagagccgcatcagcccc
atccagaaacctcaaggcctggaccctgtggagatcctgcaggaacgagagtacagactt
caggctcgcatagctcacaggatacaagaactggaaagtctgcctggctccttgccacca
gatttacgcaccaaagcaaccgtggaactgaaagcacttcgcttactcaacttccaacgt
cagctgagacaggaggtggtggcctgcatgcgaagggacaccaccctggagacggccctc
aactccaaggcgtacaagcggagcaagcgccagaccctgcgtgaggcacgcatgacagag
aaactggagaagcagcagaagatagagcaggagaggaaacgccggcagaagcaccaggaa
tacctgaacagtattttgcaacatgcaaaagattttaaggaatatcaccggtctgtggct
gggaagatccagaagctgtccaaagcagtggcgacttggcatgctaacaccgaaagggag
cagaagagggagacggagcggattgagaaggagaggatgcggaggctgatggctgaagat
gaagagggctacaggaagctcattgaccagaagaaagacagacgcctagcctacctattg
cagcagaccgatgagtatgtcgccaatctgaccaacctggtttgggagcacaagcaggcc
caagcagccaaagagaagaagaagaggaggaggaagaagaagaaggcagaagagaatgca
gagggaggggagcctgccctgggaccggatggagagccaatagatgaaagcagccagatg
agtgacctgcctgtcaaagtgacacacacagaaaccggcaaggtcctctttggacccgaa
gcacccaaagcaagtcagctggatgcctggctggagatgaatcctggctacgaagtggca
cccagatctgacagtgaagagagcgaatctgactatgaggaagaggatgaagaggaagag
tccaataggcaggaaacagaggagaagatactgctggatccaaacagcgaagaagtttcc
gaaaaagatgccaaacagatcattgagactgcgaaacaggacgtggatgacgaatacagc
atgcagtacagcgccagaggctcccagtcctactacacggtggctcacgctatctccgag
agggtggagaagcagtctgccctcctcattaatggcaccctaaagcattaccagctccag
ggcctggaatggatggtttccctgtataataacaatctgaacggaatcttagctgatgaa
atggggctaggcaagacgatccagaccatcgcactcatcacatatctgatggagcacaaa
aggctcaatggtccctacctcatcatcgtccccctctcgactctgtctaactggacatat
gaattcgacaagtgggctccttctgtggtgaaaatttcttacaagggcacccctgccatg
cgacgctcccttgttccccagctacggagtggcaaattcaatgtcctcctgactacttat
gagtacattataaaagacaagcacattcttgcaaagattcggtggaaatacatgatcgtg
gacgaaggccaccgaatgaagaatcatcactgcaagctgacccaggtcctaaacacacac
tacgtggcccccagaaggatccttctgactgggaccccgctgcagaataagcttcccgaa
ctctgggccctcctcaacttcctcctccctacaatcttcaagagttgcagtacctttgag
cagtggtttaatgctccatttgccatgactggcgaaagggtggacctgaacgaagaggaa
acgattttgatcatcaggcgtctacacaaggtgttgcgaccctttctactgaggaggctg
aagaaagaggttgagtctcagcttccggaaaaggttgaatatgtgatcaagtgtgacatg
tcagctctgcagaagattctgtaccgtcatatgcaagccaaggggatcctcctcacggat
gggtctgagaaggataagaaggggaaaggaggtgccaagacactgatgaacaccatcatg
cagctgaggaaaatatgcaaccacccgtatatgtttcagcacattgaggaatcctttgct
gaacacctgggctattcgaatggggtcatcaatggggctgagctgtatcgggcctcagga
aagtttgagctacttgatcgtattctgcccaaattgagagcgactaaccaccgcgtgctg
cttttctgccagatgacgtcactcatgaccatcatggaggattactttgcttttcggaat
ttcctttacctgcgccttgatggcaccaccaagtctgaagatcgcgctgctttgctgaag
aaattcaatgaacctgggtcccagtatttcattttcttgctgagcacacgagctggaggc
ctgggcttaaatcttcaggccgcagacaccgtggtaatctttgacagcgactggaatcct
catcaggatctgcaggcccaagaccgagctcaccgcattggccaacaaaatgaggtccgg
gtgctgaggctttgcaccgtcaacagtgtcgaggaaaagattctcgctgctgccaagtac
aagctgaatgtggatcagaaggttatccaggcaggcatgtttgaccagaagtcatccagc
cacgagcggagggcattcctgcaggccattctggagcatgaagaggagaatgaggaagaa
gatgaggtaccagacgacgagaccctgaaccagatgatcgctcgccgggaagaggagttt
gatctttttatgcgcatggacatggaccggcggagggaggatgccaggaacccgaagcgc
aaacctcgcttgatggaggaagatgagctgccctcctggattatcaaggatgatgctgaa
gtggaaaggctcacctgtgaagaagaggaagaaaagatatttgggaggggttctcgccag
cgccgggatgtggactacagcgatgccctcacagagaagcaatggctccgggccatcgaa
gacggcaatttggaagaaatggaagaggaggtacggcttaagaagagaaaaagacgaaga
aatgtggataaagacccggtgaaggaagatgtggaaaaagcgaagaaaagaagaggccgc
cccccggctgagaagttgtcaccaaatcctccaaaactaacgaagcagatgaacgccatc
attgatactgtgataaactacaaagacaggtgtaacgtggagaaggtgccctgtaattct
cagttggaaatagaaggaaacagttcagggcgacagctcagtgaagtcttcattcagtta
ccttccaggaaagagttaccagaatactatgaattaattaggaagccagtggatttcaaa
aagataaaggaacgaatccgtaaccataagtaccggagcctgggagacctggagaaagat
gtcatgctcctctgtcacaatgcacagacattcaacttggaaggatcccagatctatgaa
gactccattgtcctacagtcagtgtttaagagtgctcggcagaagattgccaaagaagaa
gagagtgaggaagaaagcaatgaagaagaagaggaagatgatgaagaggagtcagagtca
gaggcgaaatctgtgaaggtgaaaatcaagctgaataaaaaggaagaaaaaggccgggac
acagggaagggcaagaagcggccaaaccgaggcaaagccaaacctgtcgtgagcgacttt
gacagcgatgaggaacaggatgagaacgaacagtcagaagcgagtggaactgacaacgag
tga
DBGET
integrated database retrieval system
