Mastomys coucha (southern multimammate mouse): 116103963
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Entry
116103963 CDS
T07224
Symbol
Pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mcoc03009
]
116103963 (Pdcd11)
Ribosome biogenesis [BR:
mcoc03009
]
Eukaryotic type
90S particles
Other 90S particles
116103963 (Pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Spt6_S1
HAT_Syf1_CNRKL1_C
OB_RRP5_4th
Suf
OB_RRP5
TPR_14
TPR_19
ARM_TT21
TRAM
TPR_6
UTP6_C
DUF2110
TPR_15
DUF7017
ARM_TT21_5th
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
116103963
NCBI-ProteinID:
XP_031246466
LinkDB
All DBs
Position
Unknown
AA seq
1872 aa
AA seq
DB search
MADLEESFPRGGTRKPHKSETSSRQEAEQDNLFDISTEEGPTKRKKKQKGPAKTKKLKIE
KRKSSKSMKEKFEILSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYT
QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLDVTATGKKSIKLSVNPRRVNKVLS
AEALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLQKAQEYIRQKNKGANFKVGQYLT
CLVEEVKSNGGVVALSIEHSRVSSAFATEEQSWSLNNLLPGLVVRAQVQKVTEFGLQLNF
LTFFMGLVDFMHLEPKKMGSYSSNQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRIS
HQQLGAVLDNVPVQGFFKKAGAIFSLKDGVLAYARLSHLSDSKKAFNAEAFKPGSTHKCR
IIDYSQMDELALLSLRKSIIAAPFLRYHDIKTGTVVKGTVLAIKPFGILVKVGEQMKGLV
PSMHLADIMMKNPEKKYNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAK
PGLQTHGVIIRVKDYGCIVKFYNGVQGLVPKQELSAQHIPDPEKVFYTGQVVKVAVLSCE
PSKERMLLSFKLLRDSEPKDESVENSHKKGRAVNIGQLVDVKVLEKTKNGLEVAILPDNI
PAFLPTPHLSDHVANGRLLHHWLQTGDTLHRVLCLSQSERHILLCRKPALVSTVEGGQDP
KSLSEIQPGMLLIGFVKCIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVV
AKVTNVDESKQRMLLSLRLSDCSLGDTASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTL
ADMTPGMILDVMVQEVLEDGSVVFSGGPVSDLILRASTYHRAGQEVEPGQKKKVVVLHVD
MLKLEVHVSLHQDLVNRKTRKLRKSSRHQGIVQHLEESFAVASLVETGHLVAFSLISHLN
DTFHFDSEKLCVGQGVCLTLKTTEPGVTGLILAVEGPASKRTMTPARRDSETVDDKGEEE
EGEEGDLTVRPKKRHSLAIGDKVTGTIKSVKATHAVVTLDDGFVGCIHASRILDDVPVGT
SPTSTLKVGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNTHS
VDPEEKTRQYQAGQTVTCFFKKYNVTKKWLEVDIGPDIRGRIPLLLASLSFKVLKHPDKK
FQVGQAIRATVVGPDVPRAFLCLSLIGPHKLEEGEVAMGRVVKVVPSKGLTISFPFGKIG
KVSLFHVSDSYSEAPLQDFCPQKIVRCYILSTAHHVLALSLRSSRTNKETKNRVEDPEVN
SIEDIREGQLLRGYVKSVLPSSVIIGLGPSVLGLAKYSHVSECIPPEKELYSRCLPEGKL
VTAKVLRVNPMKNLIELSLLPRDTGKPDVFSASPEPPLPTQEERKGGAEGGLKGEEKSQK
KKEKNQKRQEEPRLSSQKKEPQKSQRGGQGKRERQESESEQELVNKRPKKSGAPEENNSG
VEVYYREGEDEVEAPKLPPGGKQTKAAEVPRLHLSSGFVWDVGLDSLTPALPLREESSDS
EEDEQPHQAKKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSS
ILWLQYMAFHLQATEIEKARTVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTK
VFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRS
QAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYPKRTDVWS
VYIDMTIKHSSQKEVRNIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL
EYVEAKSSALED
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atggcagatctggaagaaagcttcccccgagggggaacaaggaagccccacaaatcagag
acgtcttcccggcaggaggctgaacaggacaacttatttgatatttccacagaagaaggt
cccactaaaaggaaaaagaaacagaaagggccagcaaaaacaaaaaaactgaaaattgag
aagagaaaatccagcaaatctatgaaagagaagtttgaaattcttagtcttgagtcccta
tgtgaggggatgcggattttaggttgtgtgaaagaggtgaatgagctggagctggtggtc
agtcttcccaatggcctccaagggtttgtgcaagtgactgaaatctgtgacgcctacact
cagaagctgaatgagcaggtggcacaagaagaacctctggaggacctactccgcctgcct
gagctcttctcacctggaatgctggtgaggtgtgtggtgagcagcctggacgtcacagcg
actggcaagaagagcatcaagctttctgtgaaccccagacgtgtcaacaaagtactgagt
gctgaggccctgaggcctggcatgctgctgacaggcacagtgtcaagcctggaagaccat
ggctacctagtggacattggtgttggtggaaccagagcctttctgtcacttcagaaggcg
caagaatacattcgacagaagaacaaaggtgctaatttcaaagtcggccagtacctgacc
tgtctagttgaagaggtgaaaagcaatggaggagttgtggctctgtctatagagcactcc
cgggtttcttctgcatttgcaactgaggagcaaagctggagcctgaataacttactacca
gggctggtggtcagagcccaggtgcagaaggtaactgagtttggactccagctaaatttc
cttacgttcttcatgggcctggttgacttcatgcatctggagcccaagaaaatgggatct
tattcttcaaatcaaacagtaaaagcctgcattctctgcgttcatcctcgcaccagggtt
gtacgactgagcctgcgtcccatcttcctgcatcctgggcgtccactcacccgcatctct
caccagcagctaggggccgtgctggataatgttcctgttcaggggtttttcaagaaggct
ggggccatcttcagtctgaaggatggggtactggcctatgcccggctcagccatctctct
gattctaagaaagcgttcaatgctgaggccttcaaaccggggagcactcacaagtgtaga
atcattgactacagccaaatggatgagctggccttgctctctctgcggaaatcaattatt
gcagctccgtttcttagatatcatgacatcaaaacagggacagtagtaaagggtacagtg
ctggctattaagccatttgggatactggtgaaggtgggtgaacaaatgaaaggcctggta
ccctccatgcacctggctgacatcatgatgaagaacccagagaagaagtacaacacaggg
gatgaggtcaagtgcagggttttgctctgtgaccctgaagccaagaagctcataatgacc
ctgaagaaaacccttgtcacatccaaactccctgccattacctgctatgaggatgccaag
cctggcctacagactcacggtgttatcataagggtcaaggactatggctgcattgtaaag
ttctacaatggtgtgcaggggctagtgcccaagcaggagcttagtgcccagcatatccct
gacccagagaaggtcttttacactggccaggtggtaaaggtggcagtgctgagctgtgag
ccttccaaagagaggatgctcctatcctttaaactgttgagagattcagagccaaaggat
gagagtgttgagaacagtcacaagaaaggaagagccgtgaacatcgggcagttggtggat
gtgaaggttctggagaagaccaaaaatgggctggaggtggccatcctgcctgacaacatc
cctgctttcctccccacgcctcatttgtctgaccatgttgccaatggccggctgttgcat
cactggctccagacaggtgacacccttcaccgagttctgtgtctgagccagagtgagaga
cacattctgctttgcagaaagcctgctttggtctccacagtagagggtggccaggacccc
aagagcctctcagagatccagcccggaatgctgctcattggttttgtgaagtgcatcaag
gactatggggtgttcgtccagtttccctcaggccttagcggactgtcccccaaaactatc
atgagtgacaagttcgtaaccactccaagtgaacactttgtggagggtcagacagtcgtt
gctaaggtgaccaatgtggatgaatcgaagcaaaggatgctgctgtctctgcggctgtca
gactgcagtctgggagatacggccagcaccagcttcctcctcctgtgccagtgcctggaa
gagctgcagggcattcgcagcctcatgagcaaccaagactctgtattgatccagacactg
gctgacatgaccccagggatgatccttgatgtgatggtacaagaggtgttggaagatggc
tcagtggtgttcagtggaggccctgtgtctgacctgatcctgagagccagcacataccac
cgggcagggcaggaggtggagcctgggcagaagaagaaggttgtggtcttacacgtggac
atgttgaagttggaggtccatgtttcccttcaccaggacttggttaacaggaaaaccaga
aagctgagaaaaagcagtaggcaccagggaatcgtgcagcacctggaggagtcctttgcc
gtggcctccttggtggagactggccaccttgtggctttctctctgatctctcacctcaac
gataccttccactttgactctgagaagctatgtgtggggcagggtgtctgccttaccctc
aagactacagaaccaggagtgaccggtctgattttggctgtggagggcccagcttctaag
aggaccatgacaccagctcggagggattcagagacagttgatgacaaaggggaggaggaa
gagggggaagagggggacttgactgtgaggcccaagaagaggcatagcctggctattggg
gacaaagtcaccgggaccattaagtcagtgaaggccacacatgcagttgtgaccctggat
gatggcttcgttggctgtatccatgcctcccgcatcctagatgatgtcccagtgggcacc
tctcctacgagcacactgaaagtcgggaagaaagtcactgcgagagtgatcggtgggcga
gacgtgaagacatctaagtttctcccaataagtcaccccagatttgttctgaccatcctg
gaactgagtgtccggccgagtgagttgaagggcagctacagtgctcttaatactcactcc
gtggaccccgaggagaagacccggcagtaccaggctgggcagactgtgacttgcttcttc
aagaagtacaatgtgacaaagaagtggcttgaagtggacattggaccagacatccgagga
agaattcccttgttgctcgcttccctcagcttcaaggttctgaaacacccggacaagaag
ttccaggttggccaggccatcagggccaccgttgttggcccagacgtccccagagctttc
ttatgtttgtcactcataggtcctcataaacttgaagaaggtgaagtagccatgggcaga
gtggtaaaggtggtacctagcaaaggactcaccatctccttcccttttgggaagataggg
aaagtcagtttatttcatgtgagtgactcgtactccgaggcccccctgcaagacttctgc
ccccagaagattgtcagatgttatatcctgtccacggcacaccatgtgctggctctgtca
ctacgatcgtccaggacaaacaaagagacaaaaaatagagtagaagatccagaagtcaac
tccattgaggacatcagggaagggcagctcctgcggggctacgtgaaatccgtcctgccg
agcagtgtgatcataggccttggaccttcagttctgggtttggccaagtattcacatgtg
tctgaatgtatcccaccggagaaagagctttatagcagatgtctccctgaggggaagctg
gtcactgccaaggtcctacgcgtgaaccccatgaagaacctgatagagctgtcgctcctt
ccccgtgacaccgggaagccggatgtgttctctgcttccccagaaccacctcttccaaca
caagaggagaggaaaggtggagctgagggtggcctgaaaggagaagagaagagccagaaa
aagaaagagaagaaccagaagaggcaggaggagcccaggttgtccagccagaagaaagag
ccccagaagtcacagaggggtgggcagggcaagcgggaacgccaggagtctgagagtgag
caggaactagtgaacaagaggccaaagaagtctggggctccagaagagaacaacagtggt
gtggaggtgtactaccgggaaggagaggatgaagtggaggcgccgaagctgcctcccggg
ggaaagcagaccaaagccgcagaggtgccccggctgcatctctcttcaggcttcgtttgg
gatgtggggctcgactctctgactccagccttgccgctccgagaagagagctcagacagc
gaggaggatgagcagccacaccaagccaagaagaagaagagcaagaaggaaagagagctg
gagaagcagaaggcagagaaggagctgtcgcgcattgaggaggcgctcatggaccccggg
cggcagccagagtctgcggatgactttgaccggctggtgctaagctcccccaacagctcc
atcctttggctgcagtacatggcgttccacttacaggccaccgagattgagaaggcccgg
actgtggctgagagggcgctgaagaccatctcgttcagagaggagcaggagaagctgaat
gtgtgggtggccctgctgaacctggagaacatgtacggctctcaggagtccttgactaag
gtcttcgagcgagctgtgcagtacaatgagcctctcaaggttttcctgcatctggctgac
atctacaccaagtccgagaagttcaaggaagctggtgagctgtacaaccggatgctgaaa
agattccggcaggaaaaggctgtctggatcaaatatggtgcctttgttttggggaggagt
caggctggggccagtcaccgcgtgctgcagcgagccctggagtgtctgcccgccaaggag
catgtggatgtgatcgtcaagtttgcccagctcgagttccagctcggggatgtggagcgg
gctaaagccatttttgaaaacacactgagcacctacccgaaacgcacagatgtctggtcg
gtctacatcgacatgaccatcaagcacagcagccagaaagaagtcaggaacatctttgag
cgggtcatccatctgagcctggcccctaagaggatgaagttcttcttcaagcgctacctg
gactatgagaagcagcatggcactgagaaggatgtgcaggctgtcaaggcgaaggccttg
gagtacgtggaggccaagagctcggcgctggaggactag
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integrated database retrieval system
