Mastomys coucha (southern multimammate mouse): 116104036
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Entry
116104036 CDS
T07224
Symbol
Trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcoc03016
]
116104036 (Trub1)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
116104036 (Trub1)
Transfer RNA biogenesis [BR:
mcoc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
116104036 (Trub1)
Prokaryotic type
116104036 (Trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
116104036
NCBI-ProteinID:
XP_031246687
LinkDB
All DBs
Position
Unknown
AA seq
338 aa
AA seq
DB search
MAAAESEVVSPLTVDTAPDTSGTAAASVAAEAAATARTGSQAQVSKASLAAKLMSLSGVF
AVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWNKRQKQTLKVGHGGTLDSAAQGVLVVGI
GKGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTDEKPYDEIKQEDIEGILQKFTGN
IMQVPPLYSALKKDGQRLSTLMKRGKAVEARPARPVTVHSISLLKFQPPFFTLDVECGGG
FYIRSLVSDIGKELASCASVLELTRTKQGPFTLAQHALPEDRWTIDDIARSLERCTSLLP
EELTFKKLKTENSSDQVLSCGYITLRETKREDDAVKTL
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcagagtcagaggtggtttcacctctgactgtggacactgctccagacact
tcaggaacagccgcggcctctgtagccgcagaggcggcggcgaccgccaggactggatcg
caagcccaggtctccaaggcctccctggctgctaagctcatgtcgctgagcggcgtgttc
gccgtgcacaagcccaaagggcccacctcagccgagctgctgaaccggctgaaggagaag
ctgctggcagaagctggaatgccttctccagagtggaacaagaggcaaaagcagacattg
aaagttggacatggagggacgctggacagtgctgcacaaggtgtcctggtggttgggatt
ggaaaaggaacaaaaatgttgaccagtatgttgtcggggtccaagaggtatatcgccatc
ggagaactggggaaagctacagacacgctggattctaccgggaaggtaacagacgagaag
ccgtatgatgaaataaagcaagaagatattgaaggcattctgcagaagtttactgggaat
ataatgcaagtaccccccctatattctgcactgaagaaggatggacagagactctcaaca
ttaatgaagagaggcaaggcggttgaggccagaccagccaggccagtgactgtccatagc
atctccctcctgaagttccaaccaccgttcttcactctagatgttgaatgcggaggaggt
ttttatatccgaagcttggtcagtgacattggcaaagaactcgcatcctgtgccagcgtg
ctggagctgacccgcaccaaacagggaccctttacacttgcgcagcatgccctccctgaa
gacaggtggaccatcgatgacatcgcacggtccctcgagcgctgcacatcccttctgcca
gaagagctgacgtttaaaaaattaaaaaccgagaactccagtgaccaggttttaagctgt
ggatatataactctcagggagacaaagagagaagatgacgcagttaagacactttga
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