Mastomys coucha (southern multimammate mouse): 116104720
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Entry
116104720 CDS
T07224
Symbol
Hmgb1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03410
Base excision repair
mcoc04140
Autophagy - animal
mcoc04217
Necroptosis
mcoc04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116104720 (Hmgb1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116104720 (Hmgb1)
09143 Cell growth and death
04217 Necroptosis
116104720 (Hmgb1)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
116104720 (Hmgb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcoc03036
]
116104720 (Hmgb1)
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116104720 (Hmgb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcoc04147
]
116104720 (Hmgb1)
Chromosome and associated proteins [BR:
mcoc03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
116104720 (Hmgb1)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
116104720 (Hmgb1)
MMR (mismatch excision repair)
Other MMR factors
116104720 (Hmgb1)
Exosome [BR:
mcoc04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
116104720 (Hmgb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
116104720
NCBI-ProteinID:
XP_031247065
LinkDB
All DBs
Position
Unknown
AA seq
334 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAGT
ITSLGEEKYHLQAQVKESQAPGPEPDSDSDYRPGPFLSLLEVIERGKVNPPQGKPIKVVV
SPVERAGAEKLAAQRAGSVVQPMGACRTRAVLQSRAMSGLCLRTLRTLFSRVKPTKSTTE
GCGIGGNLALREPTKTSRSVGSTDRQAKARLWEV
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagcctagaggcaaaatgtcctcatatgcattctttgtg
caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag
ttctccaagaagtgctcagagaggtggaagaccatgtctgctaaagaaaaggggaaattt
gaagatatggcaaaggctgacaaggctcgttatgaaagagaaatgaaaacctacatcccc
cccaaaggggagaccaaaaagaagttcaaggaccccaatgcacccaagaggcctccttcg
gccttcttcttgttctgttctgagtaccgccctaaaatcaaaggcgagcatcctggctta
tccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagctgatgac
aagcagccctatgagaagaaggctgccaagctgaaggagaagtacgagaaggatattgct
gcatacagagctaaaggaaaacctgatgcagcgaaaaagggggtagtcaaggctggcacc
attacgagcttgggagaggaaaaataccatctacaagcccaagtgaaggaaagccaagca
cccggaccagagcccgacagtgactctgattaccggccagggccgtttcttagtctgctg
gaagtcatagagcgaggcaaggttaacccaccacaagggaaaccgatcaaagtcgtggtt
tcacccgtggagcgcgcaggagcagaaaagcttgcagcacagcgggcgggttccgtggtt
cagcccatgggagcctgcaggactcgggctgtgcttcagagccgagcgatgtctggactc
tgccttaggactcttaggactctgttctctagagtaaaacccacgaagagcaccacagaa
ggctgcgggatcgggggaaatcttgctctccgggagcccacgaagacttccaggagcgtg
ggatcgactgacagacaagcaaaggccaggctctgggaggtctag
DBGET
integrated database retrieval system
