Mesoplasma coleopterae: MCOLE_v1c02270
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Entry
MCOLE_v1c02270 CDS
T05286
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mcol
Mesoplasma coleopterae
Pathway
mcol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCOLE_v1c02270 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcol03019
]
MCOLE_v1c02270 (rnr)
03016 Transfer RNA biogenesis [BR:
mcol03016
]
MCOLE_v1c02270 (rnr)
Enzymes [BR:
mcol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MCOLE_v1c02270 (rnr)
Messenger RNA biogenesis [BR:
mcol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCOLE_v1c02270 (rnr)
Transfer RNA biogenesis [BR:
mcol03016
]
Prokaryotic type
tRNA degradation factors
MCOLE_v1c02270 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
S1CSD-TOTE-2
S1_RRP5
RNase_II_C_S1
Pox_RNA_pol
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ATZ20741
UniProt:
A0A2K8P1W3
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All DBs
Position
252264..254378
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AA seq
704 aa
AA seq
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MNKEIILQIVKENNEMISINSLASKLNYFDFPILENVLNELNEENAIALTIEKNIYLLGG
SYKKGNLRMNPKGFGFVNDVLQPEEEAYFVPPVSLNGCFDSDEVIFKVIKEQDKTRAEIL
ELCLRVKEFLIGEIVRSYDGKFLDFIPSDQAFTGFRIRILNKQEFPIQEYQIVKAKIISV
KDRLMFVRLKKVIGDARKASDRILSIAEEFEIRTEFEKATLKEAERVNIAVDKEVDEINR
RMKHSLLEKMVVTIDGIDSKDLDDAICVEKLDNGEFKLYVAIADVSHYVKPKTPLDKEAL
IRGNSTYLANRVLPMLPKILSDDLCSLNPNTKKFALACEMKFDKNGIMISKEIYETIMIS
KVRLNYNEVNEYIANKSWNHCDESKTMIDQAIELFKLIEQVKIKRGTITFDVREPKVIMD
ENSNVIEIKARQTGESEKLIEQFMVSANEAVAEIVYEMELPFIYRNHDKPDEEDLITWYQ
SLKSFGIDPKLTPAEMLDPLNINKTLKRISEQTKDPIEEELLNLSLLRYMAKAKYELENI
GHFGLSSQCYTHFTSPIRRYSDLIVHRYLKQYVINKNYDKKALEINEAFVKKASVIINET
ETTSVDCEREVVKACTVEYMSDKIGNIYEGTISVALKFGIFVQLDNMVEGLVHISNLEPN
IVYDETNKILIKHDNTFYRMGQKVKIKVISADIRKRKIDFILVK
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaaataatattacaaatagtaaaagaaaataatgagatgatatcaataaac
agtttagcttcaaagctaaactattttgattttcctatattagaaaatgtgttaaatgaa
ttgaatgaagaaaatgcaatagcgcttacaattgaaaaaaatatttatttattgggagga
agttacaaaaaaggaaatttaagaatgaatccaaaaggttttggatttgttaatgacgta
ttacagccagaagaagaagcttattttgtaccaccagttagtttgaacgggtgttttgat
agtgatgaagttatatttaaagttattaaagaacaagataaaacaagagctgaaattcta
gaattatgtttaagagttaaagagtttttaattggtgaaatagttagaagttatgatggt
aaatttttagactttattcctagtgatcaagcctttactggatttagaattagaattttg
aataaacaagaatttcctattcaagaatatcaaatagttaaagcaaaaataatttcagtt
aaagataggttaatgtttgttagattaaaaaaagttatcggtgatgctagaaaagcaagt
gacagaattttatcaatagcagaagaatttgaaattagaactgagtttgaaaaagcaact
ttaaaagaagcagaaagagttaatattgctgttgataaagaagtcgatgaaattaataga
agaatgaaacattcattacttgaaaaaatggttgttacaattgatggtattgattcaaaa
gatttggatgatgctatatgtgttgaaaaattagataatggtgaatttaaattatatgta
gctatcgctgatgtaagccattatgtaaaaccaaaaacaccactagataaagaggcatta
ataagagggaattctacgtacttagcaaatagagttttaccgatgttaccaaaaatttta
agtgatgatttatgttcattaaatcctaatactaaaaaatttgcattagcatgtgaaatg
aagtttgataaaaatggaattatgattagtaaagaaatttatgaaacaattatgatctca
aaagtgagattaaattataatgaagttaatgaatatatcgcaaacaaatcttggaatcat
tgtgatgaatcaaaaacaatgattgatcaagctattgaattatttaaattaattgaacag
gttaaaataaagcgtggaactattacatttgatgtacgtgaaccaaaagttataatggat
gaaaatagtaatgttattgaaattaaggcaagacaaacaggtgaatctgaaaaattaatt
gaacaatttatggttagtgcaaatgaagcagttgctgaaatagtttatgaaatggaattg
ccatttatttatagaaatcatgataaacccgatgaagaagatttaattacttgatatcaa
tcacttaaatcattcgggattgaccctaaattaactccagcagaaatgctagatccttta
aatatcaataagacattaaaacgcattagcgaacaaacaaaagatcctatcgaagaagag
ttattgaacttatcacttctaagatatatggctaaagctaaatatgagttagaaaatatt
ggtcattttggattgtcaagtcaatgctatactcactttacttctccaatcagaagatac
agtgacttaattgttcatcgatacttaaaacaatatgtaattaataaaaattatgataaa
aaagcattggaaataaatgaagcatttgttaagaaagcatcagttattattaacgaaact
gaaacaactagtgttgattgtgaacgtgaagttgtcaaagcatgtacagttgagtacatg
agtgataaaatcggtaatatatatgaaggaacaatatcggtagctttaaaatttggtatt
tttgtgcaactagataatatggttgaaggtttagtccatatttcaaatctagaaccaaac
atagtttatgatgaaacaaataaaattttaattaagcatgataatacattctacagaatg
ggacaaaaagttaaaattaaagttataagtgctgatataagaaaaagaaaaattgacttt
attttagttaaataa
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