Mycoplasmopsis columbina: NCTC10178_00256
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Entry
NCTC10178_00256 CDS
T06777
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mcom
Mycoplasmopsis columbina
Pathway
mcom03030
DNA replication
mcom03430
Mismatch repair
mcom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10178_00256 (dnaE)
03430 Mismatch repair
NCTC10178_00256 (dnaE)
03440 Homologous recombination
NCTC10178_00256 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcom03032
]
NCTC10178_00256 (dnaE)
03400 DNA repair and recombination proteins [BR:
mcom03400
]
NCTC10178_00256 (dnaE)
Enzymes [BR:
mcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC10178_00256 (dnaE)
DNA replication proteins [BR:
mcom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC10178_00256 (dnaE)
DNA repair and recombination proteins [BR:
mcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC10178_00256 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
Motif
Other DBs
NCBI-ProteinID:
VEU76846
LinkDB
All DBs
Position
1:complement(253416..256346)
Genome browser
AA seq
976 aa
AA seq
DB search
MKLVHLYNTTEYSFLNSLIRIEELVTESKKHNLKAVALTDHNNLFALGEFLKLCQKNEIK
PIIGVDLDYEKENKKYRIILLAKNYLGYQLINKLILLKSQDQNLTLNDFAFSNDIFILDH
PTLGYFIKEGEELLFSNKNYFIPSLDLEHSNGIYLRENKLIKKEDNSALRILQQIGNLEV
SSNDYPDYFGELEIPQIIIERMHKIIDECNVIFPEKKLDLAHFNNFNELEANNHLINLIN
NALEKKQDELKEYKNWEERLKYEFEIIKNFKFTNYFLIIQDLIHWAEMNKIAVGPGRGSA
AGSLVSYLLGITKINPLKYGLLFERFLNPGRLSWPDIDIDIQDDRRNEVFAYLKEKYGFE
NTALISTFQTIGAKMAIRDVARVLGTNYINNVEVNKISKTLELNASLKDSIINNLHFKIA
IENYPELLNFALKIEGLPRQQGYHPAGLIISQTPINKLVPSMMSNDNIFQQVQLSMNYIE
DYGLLKIDLLGLKTLTEISQIEQHIEPNLHFDNLIKQNSHLINDKDTFSMLNSGFTEGIF
QLESNGMKSTVKKVKIDAFDDLYAIISLFRPGPKKYIDNYAESKNKNVKVLTIDPRYDEI
VKNTFGIIVYQEQIMQIAQKVANMSFIEADFLRRAIGKKHEDEVASYQKIFVEGAEKNNV
NVNIANQIYENIKLFGLYGFNKSHAVSYAYLTMKMAYYKKHYPLYFYNALISSSQGAQET
IKKYVDEAKEMGFIVYSPNILYSSNNCQIINSNLYLPFNLIKGFGNEGINKILKDKEENG
EYSNNIVEIFLRLRFAGLKDAALDTLTRANVFRDFGHIKYIQHCDKYVKDIYNLFSTAKS
YSEVKEKIVKMNYLELNIYFDQEQDLEYEMNCENELLGSIYNVHLTSKYEKDFPKRLNNL
TPGDEEWFVVEYLDMRKIKNKDFYYLKCKDSSREIIFYFSPNFYNYFEGIKKHKIVLIKI
NYKYSTPKIIDWKEVK
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagtgcatttatacaacactactgaatactcatttctaaattctttaattaga
attgaagaattagttactgaaagcaaaaaacataatcttaaagcagtagctttaacagat
cataataatttatttgctttgggagagtttttaaaactttgtcaaaaaaatgaaattaaa
cccattatcggtgttgatttagactatgaaaaagaaaataaaaaatatagaataattttg
ctagctaaaaattatttgggttatcaattaataaataaattaattttgttaaaaagtcaa
gatcaaaatttgacattaaatgatttcgctttttcaaatgatattttcattcttgatcat
ccaactttaggatacttcataaaagaaggagaggaattattattctcaaataaaaattat
tttattccttctttagatcttgaacattcaaatggtatttatttaagagaaaataaatta
attaaaaaagaagataattctgctttaagaattctacaacaaattggaaatttagaagtt
tcatcaaatgattacccagattattttggtgagttagaaattccacaaataataattgaa
agaatgcataaaattattgatgaatgtaatgttatctttcctgaaaaaaaattagatttg
gcacactttaataattttaatgaattagaagcaaataatcatcttataaatcttattaac
aatgctttagaaaaaaaacaagatgaattaaaagaatacaaaaattgagaagaaagatta
aagtatgaattcgaaattattaaaaattttaaatttactaattactttttaatcattcaa
gatttgattcattgagcagaaatgaataaaattgctgttggtccaggtagaggtagcgct
gcaggatcacttgtttcttatttgcttggtattaccaaaattaatcctcttaaatacggt
ttactttttgaacgttttttaaatcccggaagattaagctgaccagatattgacattgat
attcaagatgaccgaagaaatgaagtatttgcctatttaaaagagaaatatggtttcgaa
aatactgcgttaatttccacttttcaaactattggtgcaaaaatggcaataagagatgtc
gcaagagttttaggaactaactatataaataatgtggaagtaaataaaatttctaaaaca
ctagaattaaatgcatcattaaaagactcaataatcaataatttacattttaaaattgcc
attgaaaattatccagagttactaaattttgctcttaaaattgaaggtctgccacgtcaa
caaggctatcatcctgcaggtttaataatttctcaaacgcctataaacaagttagttcca
tcaatgatgtcaaatgataatatttttcaacaagttcaactctcaatgaattacattgaa
gattatggccttctaaaaatagatttgcttggtttaaaaactttaacagaaattagtcaa
attgagcagcatattgaacctaacctacattttgataatttaattaaacaaaattctcat
cttataaatgataaagatacattttcaatgttaaatagtggatttactgaaggaattttt
cagttggaatcaaatggtatgaaaagtactgtaaaaaaggtaaaaatagatgcttttgat
gatttatatgcaatcatttctctttttagaccaggaccaaaaaaatatattgataactat
gccgaaagtaaaaataaaaatgttaaagttttaacaattgatcctagatatgatgaaatt
gtaaaaaacacttttggaattattgtttatcaagaacaaattatgcagattgctcaaaaa
gttgcaaacatgtcatttattgaagcggattttttaagaagagcaattggaaaaaaacat
gaagatgaagtcgcatcatatcagaaaatttttgttgaaggtgcagaaaaaaataatgtg
aatgtaaatatagctaatcagatttatgaaaatataaaattattcggactttatggtttt
aataaaagtcacgctgtaagttatgcatatttgactatgaaaatggcatattacaaaaaa
cattatccgctttatttttacaatgctcttatctcatcatcacaaggcgcacaggaaact
attaaaaaatatgtagatgaagcaaaagaaatgggatttattgtttattctcctaacatt
ttgtattcaagtaataattgtcaaattattaacagtaatttatatcttccatttaattta
attaaaggttttggaaatgaaggaataaacaaaatactaaaagataaagaagaaaatggt
gaatattcaaacaacatagtagaaattttcttaagattaagatttgccggattaaaggat
gctgcacttgatactttaacaagagctaatgtttttagagattttggacatatcaaatat
attcagcattgcgataaatatgtaaaagacatatataatttattttcaactgctaaatcc
tactcagaagttaaagaaaaaattgtcaaaatgaattatttagaattgaatatttatttt
gatcaagaacaagatttagagtatgaaatgaactgtgaaaatgaattattaggatcaata
tacaatgttcatttaacatctaaatacgaaaaagattttccaaaaagacttaataattta
actcccggagatgaagagtgatttgttgttgaatatttagatatgcgaaaaataaaaaat
aaagatttttactatttaaaatgtaaagatagttcacgagaaataattttttactttagt
cctaacttttacaattattttgagggtataaaaaaacataaaattgttcttatcaaaatt
aattataaatattcaacacctaaaataattgattgaaaagaggttaaataa
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