Mycoplasmopsis columbina: NCTC10178_00381
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Entry
NCTC10178_00381 CDS
T06777
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mcom
Mycoplasmopsis columbina
Pathway
mcom03420
Nucleotide excision repair
mcom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10178_00381 (pcrA)
03430 Mismatch repair
NCTC10178_00381 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcom03400
]
NCTC10178_00381 (pcrA)
Enzymes [BR:
mcom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10178_00381 (pcrA)
DNA repair and recombination proteins [BR:
mcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10178_00381 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
NCTC10178_00381 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
AAA_11
ADDB_N
PcrA_UvrD_tudor
Microtub_bd
DUF1002
ResIII
Motif
Other DBs
NCBI-ProteinID:
VEU76959
LinkDB
All DBs
Position
1:468155..470362
Genome browser
AA seq
735 aa
AA seq
DB search
MSRRERILKDLNEDQEKALNYFDGPLRIIAGAGSGKTRVLTRKIAYLINCLAIAPSEILA
VTFTNKAANEMNERVMQYSNIDPQNTTVEKPEICTFHALCAKILRKEAHFLGFKNDFQIV
DETDKKTILNNIYKNHNLSTQEVKYTRLINLFSMAKNSNFTSDELVSELNQRDNDLASRD
SNKLIGQMFDEYNAFLKEKNCFDFDDLIIKVNELFNSIPDVADFWANKYSYILVDEFQDT
SKLQYEIIKKLSSKNAQLTIVGDPDQTIYSWRGADVNLILDFDKDFPNTETVILKTNYRS
SQKILNAANSLIKYNKKRFSKDLVTDNNLGEEIEFNHAFSPEAEARWVVQKINELKKKKI
QLKNIAIFYRSNYYSRPFEQELEKEGINYKVFNGQKFFQRKEIKDALSYLRVIYDFSDVS
LIRIINTPARKIGDATLAKLEAFAESKNTNLLDALITHTKELPVTNTVRNEIIKLLNSIN
RHHKALKKYSIHETLNSLLKDVEYSAYIKNDPTLKGVGEDNIKELLSSIKTWEKNNNPLG
KGIKEYLEEISLFSAGDEYEMGTNYVTLMTVHSAKGLEFENVFLVGMNDKIFPHRRSLSS
NNPEILEEERRLAYVAITRAKERLFISDSRGFFLDTNEPKVPSFFIKEMGIDLDNKILQN
QEVTLDFSIIPEEQIKEINKNIIPGDIIGHTLFGEGTVLEVDQDKIRVQFAGKIGIKTLS
KNHNAVRLLSANKED
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggagggaaagaattttaaaggatttaaatgaagaccaagagaaagcattaaat
tattttgatggaccacttagaattattgcaggtgcaggaagtggtaaaacaagagtttta
acaagaaaaatagcttatttaataaattgtttagctattgcgccaagtgaaatattagca
gttacttttacgaataaagcagctaatgaaatgaatgaaagagtaatgcaatattcaaat
attgatccacaaaatacaactgttgaaaaacccgaaatttgtacttttcatgcactttgt
gccaaaattttaagaaaagaagcacactttttaggttttaagaatgattttcaaattgtt
gatgaaacagataaaaaaaccattttaaataatatttataaaaatcataatctttcaact
caggaagtcaaatacacaagattaattaatttattttcaatggctaaaaattctaatttt
acaagcgatgaacttgtttctgaattaaaccagcgtgataatgatttagcttcacgcgat
tcaaataaattaattggtcaaatgtttgatgaatataatgcttttttaaaggaaaaaaat
tgttttgactttgatgacttaattattaaagttaatgaattatttaattctattcccgat
gtagctgatttttgagctaataagtattcttatatacttgtggatgaatttcaagataca
tcaaaattgcaatatgaaattattaaaaaattaagcagtaaaaatgcacaattaacaatt
gttggcgatccagatcaaaccatatattcatgaagaggcgctgatgttaatttaattctt
gattttgataaagattttccaaatactgaaaccgttattctaaaaacaaactatcgttca
agtcaaaaaattttaaatgctgccaacagtttaattaaatacaacaagaaacgttttagt
aaagatctagttactgataacaacttgggtgaggaaatagaatttaatcatgcttttagt
cctgaagcggaagcaagatgagttgtacaaaaaattaatgagttgaagaagaaaaaaatt
caactaaaaaacattgctattttttatagatcgaattactattcacgcccttttgagcaa
gaattggaaaaagagggtattaattacaaagtatttaatggtcaaaaatttttccagaga
aaagaaattaaagatgctcttagttatttaagagtaatttatgattttagtgatgtgtca
ttaattagaattattaatacacctgcaagaaaaataggcgacgccactttagccaagctt
gaagcttttgcagaaagcaaaaataccaacttacttgatgctttaattacgcatactaaa
gaactgcctgttactaatacagttcgtaacgaaattattaagttgttaaattcaatcaat
cgccaccataaagcattgaaaaaatattcaattcacgaaactttaaactcacttttaaaa
gatgttgaatactctgcttatatcaaaaacgatccaactttaaaaggtgttggtgaagac
aatattaaagaacttttatcttcaattaaaacttgagaaaaaaacaataatccgctaggg
aaaggaattaaagaatatttagaagaaatttctctcttttcggcaggagatgaatatgaa
atgggaactaattatgttactttaatgactgttcattcagcaaaaggtttagagtttgaa
aatgtttttcttgttggaatgaatgataaaatttttccacaccgtagatcattatcatca
aataatcctgaaatcttagaagaagaaagaagattggcttacgttgcaattacaagagct
aaagaaagattgttcattagtgatagcagaggatttttccttgacactaatgaaccaaaa
gtgccttcatttttcattaaagaaatgggcatcgatttagataacaaaattttacaaaac
caagaagtaacacttgatttttcaattattcctgaagaacaaattaaagaaattaacaag
aatataattcctggcgatatcatcggtcatactttatttggagaaggaacagttttagaa
gtagatcaagataaaattagagttcaattcgctggaaaaataggaattaaaactttaagc
aaaaaccacaatgcagtaagacttttaagcgctaataaagaggattag
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