Mycobacterium cookii: MCOO_15120
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Entry
MCOO_15120 CDS
T07035
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcoo
Mycobacterium cookii
Pathway
mcoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCOO_15120 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoo03019
]
MCOO_15120 (rne)
03009 Ribosome biogenesis [BR:
mcoo03009
]
MCOO_15120 (rne)
Enzymes [BR:
mcoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MCOO_15120 (rne)
Messenger RNA biogenesis [BR:
mcoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCOO_15120 (rne)
Ribosome biogenesis [BR:
mcoo03009
]
Prokaryotic type
rRNA processing factors
MCOO_15120 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
EAD1
Motif
Other DBs
NCBI-ProteinID:
BBX45497
UniProt:
A0A7I7KUK2
LinkDB
All DBs
Position
complement(1593772..1596705)
Genome browser
AA seq
977 aa
AA seq
DB search
MTDGGSFSEVSEHSSQHEELPERLRVHSLARALGTTSRQVLDALTELDGRIRSAHSTVER
VDAVRVRDLLASATAVATPVGASQADGAVEADEPESRLMLETPDTPTDRPEYMPLFVAPQ
PVARVEVPDDTADADADDSDDSDDDDGEDFEGDDEQSERPANRRRRRGRRGRGRGRGEQN
GADKGEAGDDGTQDAGSADNTDDDPDDDDDADDSDTGDDENGSGDGTTKRRRRRRRRKSG
SGDDNEDSPSPDDPPNTVVHERAPRANKKSDSGNSEIQGIDGSTRLEAKRQRRRDGRDAG
RRRPPVLTEAEFLARREAVERVMVVRDKVRTEPPHPGSRYTQIAVLEDGIVVEHFVTSAA
SASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGSNRKIEQALKP
GDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILRE
VVPSDAGVIIRTASEGVKEDDIRADVNRLQERWTEIAERAQETKEKAAGAAVALYEEPDV
LVKVIRDLFNEDFGKLIVSGDDAWTTINEYVSSVAPELVSKLNKYEPPAEDGPDVFAVHR
IDEQLAKAMDRKVWLPSGGTLVIDRTEAMTIVDVNTGKFTGSGGNLEQTVTKNNLEAAEE
TVRQLRLRDIGGMIVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTR
KKLGTGLVEAFSTTCPHCSGRGIMLHADPVDSAPTIGRKSESGGRRGRRSKKGKAEEQPV
ASVPVHTPGEHPMFKAMAAANGRHEDDDTEGGDESAHAEDVDETLVGSDAAEADAETQEQ
VARETAEEDLDDDDFDDEDSDDEDSDDEDSDDEDDDTDEVDLDDEDLDDDDELDDTDDTD
DTDDDDDDDDDDDDDDDDDDDDDDDSDDDDDDDDDDTDDDDTDDDDPVSAGHEVAAVTAE
RPRRRRAAARPAGPPTH
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
gtgacagacggtggctcattctcagaggtttcggaacactcgtcgcagcacgaggagctg
ccagaacggctcagggtccattccctggcccgagcgctggggacgacgagcaggcaggtg
ctcgacgcgctgaccgagcttgacggtcgaatccgcagcgcccattcgactgtggagcgc
gtggacgcggtccgggtacgagacctgctggccagcgcgaccgcggtcgccacgccggtc
ggcgccagccaggcggacggcgccgtcgaggcggacgaacccgagtcgcggctgatgctg
gaaactccggacaccccaaccgatcgacccgagtacatgccgctgttcgtcgcgccgcag
ccggtcgcgcgggtcgaggtgccagacgacaccgccgacgccgacgccgacgactccgac
gactccgacgacgatgacggcgaggacttcgagggcgacgacgagcagtccgaacgcccg
gccaaccggcggcgacgccgcgggcggcgagggcggggccgcggccgcggcgagcagaac
ggcgccgacaagggcgaggccggcgacgacggcacgcaggacgccgggtcggcggacaac
accgacgacgaccccgacgacgacgatgacgccgacgactcggacaccggcgacgacgag
aacggctcgggggacggcaccaccaagcggcgccgtcgccgccggcgccgcaagtctggg
tcgggcgacgacaacgaggacagcccgtcgccagacgaccccccgaacaccgtggtgcac
gagcgggcaccgcgggccaacaagaagtctgactccggcaactccgagattcagggcatc
gacggatccacgcgcctggaagccaaacggcaacgccgccgcgacggtcgcgacgcgggg
cggcgccgaccgccggtgctgaccgaggccgagttcctggcccgccgcgaagccgtcgag
cgggtgatggtggtgcgcgacaaggtccgcaccgagccgccgcatcccggcagccggtac
acccagatcgccgtcctggaggacggcatcgtggttgagcacttcgtcaccagcgcggca
tcggcctcgctggtcggcaacatctacctgggcatcgtgcagaacgtgctgccctcgatg
gaggccgcgttcgtcgacatcggtcgcggccgcaacggcgtgctgtacgccggagaggtg
aactgggaggccgccggcctgggcgggtccaaccgcaagatcgagcaggccctcaagccc
ggcgactacgtcgtggtgcaggtcagcaaggatccggtcgggcacaagggcgcccggctg
accacccaggtgtcactcgccgggcgctacctggtgtacgtgccgggggcgtcgtccacc
ggaatcagccgcaaactgcccgacaccgaacgccagcggctcaaggagatcctgcgcgaa
gtcgtgccgtcggacgccggcgtgatcatccgcaccgcgtcggaaggcgtcaaggaagac
gacatccgcgccgacgtcaaccggctgcaggagcggtggacggagatcgccgagcgcgcg
caggagaccaaggagaaggcggccggcgccgcggtggcgctctacgaagagcccgacgtc
ctggtcaaggtcatccgcgacctgttcaacgaagacttcggcaagttgatcgtctccggc
gacgacgcctggaccaccatcaacgagtacgtgagttcggttgcgccggagctggtttcg
aagctcaacaaatacgagccgcccgctgaagacggtcccgacgtgttcgcggtgcaccgc
atcgacgagcagctggccaaggcgatggaccgcaaggtctggctgccctccggtggcacc
ctggtgatcgaccggaccgaggcgatgaccatcgtcgacgtcaacaccggcaagttcacc
ggatccggcggcaacctcgagcagacggtcaccaagaacaatctcgaggccgccgaggag
acggtgcgtcaactgcggctgcgcgacatcggcgggatgatcgtcatcgacttcatcgac
atggtcctggagtccaaccgcgacctggtgctgcgccggttgaccgaggcgctggcccgc
gaccgcacccgccaccaggtgtccgaggtgacctcgctgggcttggtgcagttgacccgc
aagaagctcggcaccggactggtcgaagcattctccacgacatgtccgcactgcagcggt
cgcggcatcatgctgcatgccgacccggtcgattccgcgccaaccatcggtcggaaatcc
gagtccggcggcaggcggggccggcgctcgaagaagggcaaggccgaggaacagccggtc
gcctcggtgccggtccatacacccggcgagcacccgatgttcaaggccatggccgcggcc
aacggtcgccacgaggacgacgacaccgagggcggcgacgagtctgcgcacgccgaggac
gtcgacgagacgctcgtcggatcggacgccgcggaggccgacgccgagacccaggagcag
gtcgcccgagagacagccgaagaagacctcgacgatgacgacttcgacgacgaggacagc
gacgacgaggacagcgacgacgaggacagcgacgacgaggacgacgacaccgacgaagtc
gacctcgacgacgaggacctcgacgacgacgatgagctggacgacaccgacgacaccgac
gacaccgatgacgacgatgacgacgatgacgacgatgacgacgatgacgacgatgacgac
gatgacgacgacgactccgatgacgacgatgacgacgatgacgacgacaccgatgacgac
gacaccgatgacgacgacccggtttccgccgggcacgaggtcgccgcggtgacggcggag
cgaccgcggcggcgtcgggccgcggccagaccggccggcccgcccactcattga
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