Mycobacterium cookii: MCOO_17230
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Entry
MCOO_17230 CDS
T07035
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mcoo
Mycobacterium cookii
Pathway
mcoo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mcoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MCOO_17230 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcoo03000
]
MCOO_17230 (alkA)
03400 DNA repair and recombination proteins [BR:
mcoo03400
]
MCOO_17230 (alkA)
Enzymes [BR:
mcoo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MCOO_17230 (alkA)
Transcription factors [BR:
mcoo03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MCOO_17230 (alkA)
DNA repair and recombination proteins [BR:
mcoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MCOO_17230 (alkA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
HTH_23
DUF6233
Motif
Other DBs
NCBI-ProteinID:
BBX45708
UniProt:
A0A7I7KW40
LinkDB
All DBs
Position
1838493..1839980
Genome browser
AA seq
495 aa
AA seq
DB search
MYEDFDRCYRAVQSKDARFDGWFVTAVLTTGIYCRPSCPVRPPFARNVRFFPTSAAAQGA
GFRACKRCRPDASPGSPEWNVRGDLVARAVRLIADGIVDRDGVRGLAAHLGYTTRQLQRL
LHAETGAGPLALARAQRAQTARVLIETTVLPFGDIAYAAGFSSIRQFNDTLRLVYDSTPS
ELRRRATARSGHNITSTGTVSLRLPVRVPFAYEGVFGHLAASAVPGCEEVRDGAYRRTLR
LPFGNGVVSLTPAPDHVRCTLALEDFRDLTSAISRCRRLLDLDADPDAVIDALGSDPELA
PVIAKAPGQRIPRTVDEAELAVRTVLGQQVSIKAARTHAGRLVAAYGEPVPDADGGLTHT
FPSVEQLGEIDPDHLAVPRARRRTVTALVAGLADGSVVLDSGCDWNAARSQLLAVPGIGP
WTAEVIAMRGLGDPDAFPASDLGLRLAAKELGLPTEQRGLTARSRRWRPWRSYATQHLWT
TLEHAVNHWPPKEAA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgaagatttcgaccgctgctaccgagccgtccaatccaaggacgctcggttcgac
ggctggttcgtcaccgcggtgctgaccaccggaatctattgccgccccagctgccccgtc
cggccgccgttcgcccgcaacgtgcgattctttcccacctcggccgccgcgcagggcgcc
ggtttccgggcgtgcaagcgctgccgtccagacgcgtcgccgggatcgccggaatggaac
gttcgcggtgacctcgtcgcgcgggccgtgcggctgatcgccgatggcatcgtcgaccgc
gatggcgtgcggggcctggccgcacacctcggctacaccacccgacagcttcagcggctg
ctgcacgcagagaccggcgccggaccactcgcgctggctcgcgcacagcgcgcgcagacc
gcgcgggtgttgatcgagacgacagtactgcctttcggtgatatcgcttatgccgcaggg
ttttccagcatccggcaattcaatgacacactgcggctggtatacgacagcacgccgagc
gagttgcgcagacgcgcgaccgcgcggtctggtcacaacatcacgtcgacgggaacggtg
tcgctccgcttaccggtacgagttccgttcgcgtacgagggggtgttcggccaccttgcc
gcgagcgcggtaccgggatgcgaggaggtacgcgacggcgcgtatcgccgaaccttgcgg
ctaccgttcggcaacggcgtcgtcagcctgacgccggcgcctgaccacgtccgttgcacg
ctggcgctcgaggatttccgcgacctgacgtcggccatctcgcgttgccgtcggctgctg
gacctcgatgccgatcctgacgcggtgatcgatgcattgggttcggacccagagcttgcc
ccggtgatagccaaggcacccggtcagcgcataccccgcaccgtcgacgaggccgagctc
gcagttcggactgtcctgggccagcaggtgtcgatcaaggccgcgcggacgcatgccggc
cggttggtcgccgcttacggcgaaccagttcccgacgccgacggcggactcacgcacacc
tttccgtccgtcgagcagctcggtgagatcgacccagaccacctggccgttccgcgagcg
cgccgtcgcaccgtcactgccctggtcgccgggctggccgacggcagcgtcgtgttggat
tccggctgtgactggaacgctgcccgcagccagttgctggcagttcccggaatcggaccg
tggacggcggaagtgatcgccatgcgtggtctcggtgaccccgacgcctttccggccagt
gatctgggattgcgtctggcggcaaaggaattgggtctgcctactgagcaacgagggctg
accgcgcgaagcaggcggtggcgcccgtggaggtcgtatgcgacccaacatctctggacc
acgttggagcacgcggtgaaccattggccgccgaaggaggccgcatga
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