Mycobacterium cookii: MCOO_17980
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Entry
MCOO_17980 CDS
T07035
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcoo
Mycobacterium cookii
Pathway
mcoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCOO_17980 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoo03019
]
MCOO_17980 (deaD)
03009 Ribosome biogenesis [BR:
mcoo03009
]
MCOO_17980 (deaD)
Enzymes [BR:
mcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCOO_17980 (deaD)
Messenger RNA biogenesis [BR:
mcoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCOO_17980 (deaD)
Ribosome biogenesis [BR:
mcoo03009
]
Prokaryotic type
rRNA helicases
MCOO_17980 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
Surface-like_ins_dom
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBX45783
UniProt:
A0A7I7KV23
LinkDB
All DBs
Position
complement(1920865..1922547)
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AA seq
560 aa
AA seq
DB search
MTFADLQIHPSVRQALVDVGYETPSAIQAATIPALMAGSDVVGLAQTGTGKTAAFAVPIL
SKIDTANKATQALVLAPTRELALQVAEAFSRYGTHLPQINVLPIYGGASYTTQLAGLKRG
AQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVERILAETPEYKQVAL
FSATMPPAIRKLSNKYLHDPTEVKVEAKTTTAENISQRFIQVAGPRKMDALTRVLEVEPF
EAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAVRERTIAALKRGGGNGIDILVAT
DVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGSALLFVSPRERHLLKSIEK
ATRSKLIEAQLPSVDDVNAQRVAKFADSITDSLGAPGLELFRRLVSDYEREHDVPMADIA
AALAAQLRDGEAFLLSPEPPPERRKERPDRPAKFDRGPGDGPKKGFATYRIAVGKRHKVG
PGSIVGAIANEGGLHRSDFGHITIRPDFSLVELPAKLSRETLKKLGKTRISGVLINLQPD
RANEKNRGGGRGGPRRDHKG
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttcgccgacctgcagattcacccgtcggtgcggcaggcgctcgtcgacgtcggc
tatgaaaccccctccgcgatccaggcagcgacgatcccggcgctgatggcgggctcggat
gtggtcggcctggctcagaccggcaccggcaaaacggccgcgttcgcggtcccgatcctg
tcgaagatcgacaccgccaacaaggccacccaggccctggtgctggcaccgacgcgggaa
ctggcgctccaggtggccgaggcgttcagccggtacggcacgcacctgccgcagatcaac
gtgctgccgatctacggtggggcgtcctacacgacgcagctggctggcctgaagcgcggc
gcgcaggtggtggtcggcacgcccggccgcgtcatcgaccacctcgaacgcgggacgctg
gatttgtcccacgtggactacctggtgctcgacgaggctgacgaaatgctcacgatgggt
ttcgccgaggaagtcgagcggatcctggccgagacgccggaatacaaacaggtcgccttg
ttttccgcgacgatgccaccggcgatccgcaagctcagcaacaagtatctgcacgacccg
accgaggtcaaggtcgaggcgaaaaccactacggcagaaaatatttcgcagcgtttcatc
caggtcgccgggccgcgcaagatggacgcgctgacccgggtgctggaggtagagccgttc
gaggcgatgatcgtcttcgttcgcaccaagcaggccaccgaagaggtcgccgaaaagcta
cgcgcccgagggttttccgcagcggcgatcaacggtgacatcccgcaggccgtacgtgag
cggaccatcgccgcgctcaagagaggtggcggcaacggaatcgacatcctggtggccacc
gatgtcgccgcccgcgggttggacgtcgagcggatctcgcatgtgctgaactacgacatc
ccgcacgacaccgagtcctacgtgcaccggatcgggcgtaccggccgggcgggacggtcg
ggctcggcactgttgttcgtctcgccgcgagaacgacacctgctcaagtcaattgagaag
gcgacccggtcaaagctgatcgaggcccagctgcccagcgtcgatgacgtcaacgcccag
cgggtggcgaagttcgctgattcgatcacggacagccttggcgcgcccggtctcgagttg
ttccgccgtctggtctccgattacgagcgcgagcacgacgtgccgatggccgatatcgcg
gcggcgctggcggcgcaattgcgtgacggcgaagcgtttctgctgtcgccggagccgccg
cctgaacgtcgcaaggagcgcccggaccggccggccaaattcgaccgcggcccaggtgac
ggtccgaagaagggttttgccacctatcgcatcgcggtcggcaagcggcacaaggttggc
cccgggtcgatcgtcggcgcgatcgccaacgaaggaggcttgcaccgcagcgacttcggc
cacatcaccatcaggccggatttctcgctggtggagctgccggccaagttgtcccgcgag
acgctgaaaaagcttggaaaaacccgtatttccggtgtgctgatcaacctgcagccggat
cgggccaacgagaagaatcgtggcgggggccgcggcgggccacgccgggaccacaaggga
tga
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integrated database retrieval system
