Maribellus comscasis: GM418_00540
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Entry
GM418_00540 CDS
T07297
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mcos
Maribellus comscasis
Brite
KEGG Orthology (KO) [BR:
mcos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcos03016
]
GM418_00540
Enzymes [BR:
mcos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GM418_00540
Transfer RNA biogenesis [BR:
mcos03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GM418_00540
Prokaryotic type
tRNA splicing ligases
GM418_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGY42194
UniProt:
A0A6I6JWQ6
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All DBs
Position
complement(125302..126699)
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AA seq
465 aa
AA seq
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MKKIKLRGKELRRIGFTSDQAIALAINLVSRHCSRSDKPEVIDLLERIHLSPRKYIDDQR
FGELAKLLVGKPVVKKKKPKLNQAALEFKVYGEENIDPAALEQMTTAMKLPVTIKGALMP
DAHVGYGLPIGGVLATYNSVIPYGVGMDIGCRMCLSVFPFSSKKIDSERDRIKKILLNET
RFGLAEFNDLEDVEILERKEFKEIKFLKTLQKKFAAQLGTSGHGNHFVDVGFVEISDFSQ
EIKLQPGSYFAVLSHSGSRNFGSEVCKHYTRIAKDKLELTGEAARLAWLDLDSEEGQEYW
AAMQLAGDYSHSNHRIIHKRLAKALGEKPLVLIENHHNFAWKEKLETGEEIVIHRKGATP
AGIGDIGIIPGTMASPAFIVSGKGNEDALQSAAHGAGRLMSRNQAKRTFTESQMQKYLQE
KGVELLGGGTDESPFAYKNIREVMKNQKDLVNVLGTFHPKIVRME
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagataaaactccggggaaaggaattaagacgcattggattcaccagcgaccag
gcaattgcgctggcaataaatctggttagcaggcattgtagtcgttctgacaaaccggaa
gtgatagacttgctggaaagaattcatttgtcgccgcggaaatatattgacgaccaacga
tttggagaactggcgaaattacttgttggaaaaccggtcgttaaaaagaagaaaccaaaa
ttgaatcaagcagcgctggaatttaaggtttacggcgaggagaatattgatccggcagcg
ctggagcagatgacaacggccatgaaactccccgttaccataaaaggcgcattaatgccc
gatgctcacgtcggttacgggttgcccattggcggagtgctggccacttataattcggta
attccctatggtgttggaatggatatcggttgccggatgtgtttgtcggtttttccgttt
tcttccaaaaagattgatagtgaacgtgacagaatcaaaaaaatattgctgaacgaaacc
cggtttggattggcagaatttaacgacttggaagatgtagaaatccttgaacggaaggaa
tttaaagaaataaagtttctgaaaacccttcaaaaaaagtttgcagctcaactgggcacg
tcggggcatgggaaccattttgtggacgtgggttttgtagaaatctcggacttttctcaa
gaaataaaactgcaacccggcagttactttgccgttttaagtcattcaggttcccggaat
tttggctcggaagtgtgtaagcattacacccgcattgcaaaagataaactggaactcact
ggtgaagcagcgcgtttggcgtggttggatttggattctgaagaagggcaggaatattgg
gcagcaatgcaactggcaggcgattattcacattccaaccatcggataattcataaacgg
ctggcaaaagctttgggtgaaaaaccgctagtcctaatagaaaaccatcacaattttgcc
tggaaagaaaaactggagaccggcgaagagattgttattcatcgaaaaggagcaacacca
gcaggaattggtgatattgggataatacctggaacaatggcgtctcctgcttttattgtc
tccggcaaaggaaatgaagatgcattacaatctgctgctcacggtgcagggcgtttgatg
tcacgtaaccaggcaaaaagaacttttacagagagccaaatgcaaaaataccttcaggag
aaaggcgttgaattactggggggtggtaccgacgaatcaccatttgcatataaaaacatc
agggaagttatgaaaaaccaaaaggatttagtaaatgtgttggggacttttcatcccaaa
attgtcagaatggaataa
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