Mycoplasma cottewii: NX779_02890
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Entry
NX779_02890 CDS
T08501
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mcot
Mycoplasma cottewii
Pathway
mcot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NX779_02890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcot03019
]
NX779_02890
Messenger RNA biogenesis [BR:
mcot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NX779_02890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Sacchrp_dh_C
Motif
Other DBs
NCBI-ProteinID:
UWD34737
LinkDB
All DBs
Position
complement(679175..681004)
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AA seq
609 aa
AA seq
DB search
MSKSHKLEDINLTQDLENIKDFDDNGDEINISIDEEEFKPYVFKQKEIDRKYQQTDIPTK
VFALGGLEEVGKNTYCIEYDDELIMIDAGVKFPDSYILGVSAVIPDYSYLVENEKKIKAL
FITHGHEDHIGGIHYLVQQVKIPVIYAPKLAAMLIRDRLKEYKLQDKTVVKEYDADDVWA
TKNIRVSFAALNHSIPDAFGILVKTPNGNIFSTGDYKFDWSPLGHFAELNKLAEMGEQGI
ELLMADSTNAEVEGYTQGERDIIKNIDKLFLQAKGRIFLTTFASNVHRIQHIIETAHKYG
RKIVILGRSFERIIKMIRQLGHLKISEKEFIKSTDIDKYKPNQIMILTTGSQGEPMAALS
RIASGKHLSINIIPGDTVIFSSSPIPGNRADVEKLVNKLTRIGAIVIENNPSLKIHTSGH
ASQEEQKLLFSLIRPHYFMPMHGEFRMLKKHVETGESVNLEKGNGFVMANGDVLELLQGK
AQIGKRVEADAVYVDGKDMTGQASNVIRERDILSKDGLIAVVVSIDSQTNTLIAQPRIIS
RGSFYVKDSGSIIGESISIVTNAVNEVLSSPKPTFGAIKKAIKSSLSPYIFKEKRRNPLI
IPVILNKKS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaagtcacaaattagaagacattaacttaacacaagacttagaaaacataaaa
gattttgatgataatggtgatgaaattaatattagtattgatgaagaagaatttaaacct
tatgttttcaaacaaaaagaaatagacagaaaatatcaacaaactgatattcctactaaa
gtatttgctttaggtggattagaagaagttggaaaaaatacttattgtattgaatatgat
gatgaattaattatgattgatgctggagttaagttccctgattcttacatattaggagtt
agtgcagttattcctgattattcatatttagtagaaaatgaaaagaaaataaaagcgtta
tttataactcacggtcatgaagatcatattgggggaattcattatttagttcaacaagta
aaaataccagttatttatgcaccaaaattagctgcaatgttaattagagatagattaaaa
gaatataaattacaagataaaacagttgttaaagaatatgatgctgatgatgtatgagca
acaaaaaatattagagttagttttgctgctttaaaccactcaatacctgatgcatttggt
attttagttaaaactccaaatggaaatattttttcaactggagattataaattcgactga
tcaccactaggacattttgctgaattaaataaattagctgaaatgggagaacaagggata
gagttattaatggctgattcaactaacgctgaagttgaaggatatactcaaggtgaaaga
gatattataaaaaatatcgataaattatttttacaagctaaaggaagaatttttttaaca
acatttgcatcaaacgttcacagaattcaacatataatcgaaactgctcataaatatggt
agaaaaattgttattcttggtagatcatttgaaagaatcattaaaatgattagacaatta
ggtcacttaaaaattagtgaaaaagaatttattaaatcaactgatatagataaatataaa
ccaaatcaaattatgattttaacaacaggaagccaaggtgaacctatggctgctctttca
agaattgctagtggaaaacatttatcaattaatattattcctggtgatacagttatattc
tcatcatcaccaattcctggaaatagagctgatgttgaaaaacttgtaaataaattaaca
agaattggagctattgtaattgaaaacaatccaagtctaaaaatacatacttcaggacac
gctagtcaagaagaacaaaaactattattcagtttaataaggcctcattactttatgccg
atgcacggtgaatttagaatgcttaaaaaacacgttgaaacaggtgagagtgttaactta
gaaaaaggtaatggatttgtaatggctaatggagatgtattagagttattacaaggaaaa
gctcaaattggaaaacgtgtagaagctgatgctgtttatgttgatggaaaagatatgaca
ggacaagcaagcaacgttattagagaaagagatattttatctaaagatggattaattgct
gttgttgtttcaatcgattctcaaacaaatactttaattgctcaaccaagaattatttct
agaggtagtttttatgtaaaagattctggatcaattattggtgaatcgatatctatagta
acaaatgcagttaatgaagttctatctagtcccaaaccaacatttggagctattaaaaag
gcaataaaatcttcattaagtccatatatttttaaagaaaagagaagaaatccattaata
attccagttattttaaataaaaaatcttaa
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