Mycoplasmopsis californica ST-6: MCFN_00880
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Entry
MCFN_00880 CDS
T03247
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mcr
Mycoplasmopsis californica ST-6
Pathway
mcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCFN_00880 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcr03400
]
MCFN_00880 (uvrB)
DNA repair and recombination proteins [BR:
mcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MCFN_00880 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MCFN_00880 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
nSTAND3
AAA_16
RNA_bind
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIA29334
UniProt:
A0A059XLF3
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Position
188027..190009
Genome browser
AA seq
660 aa
AA seq
DB search
MSGYKLVSKYKPAGDQPKAIKELIRGVENGERFQVLKGVTGSGKTFTIANVIAHFDRPVL
VLSHNKTLASQLYSELKGFFPENNVEYFVSYFDYYRPEAYIPSSDSYIEKNSQRNKEIEA
MRMSTYNSVLTTKNTIVVASVSSIYGALDPSEYREQIFYIEVGQKWKRNDFLRELVQKNY
KRNETDLILGSFSSKGDVVFIRPAHTEEFVIRVVFWGDEIETINTCHPVTKAVFEQFKRY
RIFPGEAYTVSNDLTRQVVEKIEIELEERIKYFAKNNKLLEAQRIEERTRKDIDSLSEFG
TCPGIENYSRYFDRREADERPYTLLDYLKDQNPLLIIDESHMMLPQLRGMYNGDRSRKQT
LVDYGFRLPSALDNRPLRFEEFESSFDFQTIYISATPEEYELDKTHGVLTRLYVRPTGLL
DPIIEVRPSENQVEDIYDEIQKQKLKNERTLILTTTKRLAEELTRHYLAKNEKIAFLHSE
HNTFDRNRILLKLRKGVYDTVIGVNLLREGIDLPEVSLIVVLDADKEGFLRDTKSLIQIA
GRAARNANGRVLMYAEKISRSMKEAIADNQEKRALQVEYNRVHNIVPKTIVKDIADSLLD
DAKDEQISFFLNDNKAKAKDIKAKAQLLEELRTKMNEAAQNLDYEKAIEIRDLIIELEKQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaggttataaattagtttctaaatataaaccagccggagaccaaccaaaggctatt
aaagagttaatacgaggtgttgaaaatggtgaaagatttcaggttttaaaaggggttact
ggttcaggaaaaacatttacaattgctaatgtaattgctcactttgatcgtccggttttg
gtactttcacacaataaaacgttagcaagtcagttatacagcgagttaaaaggatttttt
cctgaaaataacgttgaatactttgtatcttattttgactattatcgaccagaagcttat
ataccgagctctgattcatacattgagaaaaattcgcaacgcaataaagaaattgaggcg
atgcgaatgtcgacatataattctgttttaactacgaaaaatacaattgttgtggcttct
gtatcatcgatttatggagcattagatcccagtgagtaccgcgagcaaattttttatata
gaagttggtcaaaagtgaaaaagaaacgattttttgcgtgaacttgtgcaaaaaaattac
aaacgcaatgaaactgatcttattttaggttcttttagctcaaaaggcgatgtagtattt
attaggcctgctcacacagaggaatttgtgataagggtcgttttttgaggcgatgaaatt
gaaacaataaacacctgccatcccgttacaaaggctgtttttgaacaatttaaacgatac
agaattttccctggtgaagcatacacagtcagcaatgatttaactcgccaagttgttgaa
aaaattgagattgagcttgaagagagaattaaatattttgctaaaaacaataaactttta
gaggctcaaaggattgaagagcgtactcgcaaggatatagactcactaagtgagtttggc
acttgtcctggcattgaaaattattctcgttattttgaccgtcgggaagcagatgaaaga
ccatatacacttttagattatctaaaagaccaaaatccattgctaattattgatgaaagt
catatgatgttacctcaacttcgtgggatgtataacggagatcgcagtcgaaaacaaaca
ttagtagattatggatttagattgccgtctgcattagataatcgcccgcttagatttgaa
gaatttgaaagctcttttgattttcaaacaatttatatttccgcaactcctgaggaatat
gaacttgacaaaacacacggtgttttaactcgtttatacgtacggccaacagggctttta
gatccaattattgaagttagaccgagtgaaaaccaggttgaggatatttatgatgaaatt
caaaaacaaaaattgaaaaatgaacggacattgattttaacaacaacgaaaagactggct
gaggaactgacgcgtcattacctagcaaaaaatgaaaaaattgcatttttacactcagaa
cacaatacttttgaccgcaatcgtatattgttaaagttgagaaaaggtgtttatgatact
gtaattggcgtcaatttactgcgggaaggaattgatttgcctgaggttagtttgattgta
gttttagatgctgataaagaaggttttttaagggatactaaatcacttattcagattgca
gggcgcgccgcaagaaatgcaaatgggcgagtattgatgtatgcagaaaagatctcgcgg
agcatgaaagaagcaatcgcggataatcaagaaaaaagagcactacaggttgaatataat
cgtgtgcataatattgttcctaagacaattgtaaaagacattgcagatagtcttttggat
gatgctaaagatgagcaaattagcttctttttgaatgataataaagctaaagcaaaggat
atcaaagcaaaagcacaacttttagaagaattaagaacaaaaatgaatgaagctgcccaa
aatttagattacgaaaaagcgattgagataagagatttaattattgaattagaaaagcaa
taa
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