Mycoplasmopsis californica ST-6: MCFN_02975
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Entry
MCFN_02975 CDS
T03247
Name
(GenBank) hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mcr
Mycoplasmopsis californica ST-6
Pathway
mcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCFN_02975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcr03019
]
MCFN_02975
Messenger RNA biogenesis [BR:
mcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCFN_02975
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AIA29710
UniProt:
A0A059XRQ6
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Position
697605..699260
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AA seq
551 aa
AA seq
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MNHINIFALGGLDENGKNCYIFEFNEKIYIVNTGTKVPINSKNGVDILIPDFTYLEKNQD
RIAGVFITDVKNDTFSALPWLLMHVPNLTIYTSAFNRAIINERLSKYKIVNRSYKVTTIA
KMTKIGDIFVQPIELAGSMPGQVGFDFVTPDGDVLFMFNFVEGDLGVYGKIDFNFLQRAF
TKRKLLALVVDAGRANYSGKAVNKIKLPQSVKDVFMNANPKERIIIGAYDEEMVSIHQIV
EMAYLTKRPIVTYGKTYGQLYQLMAKEHPQLKLPELIDYKYANRTENAVILVTGSIERLY
SRFLRITDGNDVYLKLKNTDNVIMIAPPIDGLESLAAIALDEIARITPKISDVSNKEFYR
HRPARQDLIDLVKKINPQYVIPAQGLYRYLAEATKYISQDAGIRTQNCLLLQNGKIAHFI
NGKLASTKGKVKNVGDVIIDGFGIGDISTEVIAEREMLGRDGAIIITSTYSPITKKIVGK
VQINIIGSLSKEDKKQAEELIVTTMASIMDTETFEGLKDFQNRARTVIRKKIFKTFNKEP
MIIVSLNQVQN
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacataaatatatttgccttaggcggactagatgaaaatggcaaaaactgctac
atctttgaatttaatgaaaaaatttacatcgtgaacacaggaacaaaggttccaatcaac
tcaaaaaatggagtagatatactaattcctgatttcacatacctagaaaaaaatcaggat
cgaattgctggtgtatttattacagatgttaaaaatgatacattttcagcacttccttga
ttgctgatgcacgtaccaaatttaactatttatacctcagcttttaacagagcgattatt
aacgaacgtttatctaaatataaaatcgtaaatcgatcatataaagttacaactattgcg
aaaatgactaaaattggggatatatttgttcaaccaattgaacttgcaggttcaatgcct
ggccaagttggatttgattttgtaactcctgatggtgatgtgttattcatgtttaacttt
gtcgaaggcgatttgggggtatatggaaaaatagattttaactttttacaacgtgccttt
acaaaacgaaaattattagccctagtcgtagatgcaggacgagcaaattattcagggaaa
gcagtcaataaaattaaattacctcagtcagttaaagatgtatttatgaacgctaacccc
aaagaaagaattattattggtgcttacgatgaagaaatggtttcaatacatcagattgtc
gaaatggcatatttaaccaagcgaccaatcgtgacatatggtaaaacttatggccagcta
taccaattaatggctaaggaacatcctcaattaaaattacctgaattaattgactataaa
tatgctaatcgcactgaaaatgcagtaattttggtaacaggttcaattgagcgcctatat
tcgcggttcttacgaattacagatggcaatgatgtatatttaaagttaaaaaacactgat
aatgtaattatgatagcgcctcctattgacggtttggaaagtttagcggccattgccctt
gatgaaattgcgcgtataacaccaaaaatttccgacgtttcaaacaaggaattttataga
caccgtcctgcccgtcaagacctaattgatttagtgaaaaaaattaatccacaatatgtt
atccctgcacaaggtttatatcgttatcttgccgaagctactaaatacataagtcaagac
gctggcataagaactcaaaattgtttattgctacaaaatggtaaaattgctcactttatt
aacggaaaattagcaagtacaaaaggcaaagttaagaatgttggtgatgttattattgat
ggctttggaattggtgatataagtactgaagttattgctgaaagagaaatgttggggcgc
gacggagcaatcatcattacatcaacgtatagtccaattactaaaaaaattgttggtaaa
gtgcaaattaatattatcggttctctttcgaaggaagataaaaaacaagctgaggaatta
attgtaacaactatggcatctatcatggatactgaaacatttgaaggactaaaagacttt
caaaaccgtgcacgaacagtcattcgcaagaaaatatttaagacttttaataaagaacca
atgattattgtttccttgaatcaagttcaaaactaa
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