KEGG   Mycoplasmopsis californica ST-6: MCFN_02975
Entry
MCFN_02975        CDS       T03247                                 
Name
(GenBank) hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
mcr  Mycoplasmopsis californica ST-6
Pathway
mcr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mcr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MCFN_02975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcr03019]
    MCFN_02975
Messenger RNA biogenesis [BR:mcr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MCFN_02975
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL
Other DBs
NCBI-ProteinID: AIA29710
UniProt: A0A059XRQ6
LinkDB
Position
697605..699260
AA seq 551 aa
MNHINIFALGGLDENGKNCYIFEFNEKIYIVNTGTKVPINSKNGVDILIPDFTYLEKNQD
RIAGVFITDVKNDTFSALPWLLMHVPNLTIYTSAFNRAIINERLSKYKIVNRSYKVTTIA
KMTKIGDIFVQPIELAGSMPGQVGFDFVTPDGDVLFMFNFVEGDLGVYGKIDFNFLQRAF
TKRKLLALVVDAGRANYSGKAVNKIKLPQSVKDVFMNANPKERIIIGAYDEEMVSIHQIV
EMAYLTKRPIVTYGKTYGQLYQLMAKEHPQLKLPELIDYKYANRTENAVILVTGSIERLY
SRFLRITDGNDVYLKLKNTDNVIMIAPPIDGLESLAAIALDEIARITPKISDVSNKEFYR
HRPARQDLIDLVKKINPQYVIPAQGLYRYLAEATKYISQDAGIRTQNCLLLQNGKIAHFI
NGKLASTKGKVKNVGDVIIDGFGIGDISTEVIAEREMLGRDGAIIITSTYSPITKKIVGK
VQINIIGSLSKEDKKQAEELIVTTMASIMDTETFEGLKDFQNRARTVIRKKIFKTFNKEP
MIIVSLNQVQN
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgaaccacataaatatatttgccttaggcggactagatgaaaatggcaaaaactgctac
atctttgaatttaatgaaaaaatttacatcgtgaacacaggaacaaaggttccaatcaac
tcaaaaaatggagtagatatactaattcctgatttcacatacctagaaaaaaatcaggat
cgaattgctggtgtatttattacagatgttaaaaatgatacattttcagcacttccttga
ttgctgatgcacgtaccaaatttaactatttatacctcagcttttaacagagcgattatt
aacgaacgtttatctaaatataaaatcgtaaatcgatcatataaagttacaactattgcg
aaaatgactaaaattggggatatatttgttcaaccaattgaacttgcaggttcaatgcct
ggccaagttggatttgattttgtaactcctgatggtgatgtgttattcatgtttaacttt
gtcgaaggcgatttgggggtatatggaaaaatagattttaactttttacaacgtgccttt
acaaaacgaaaattattagccctagtcgtagatgcaggacgagcaaattattcagggaaa
gcagtcaataaaattaaattacctcagtcagttaaagatgtatttatgaacgctaacccc
aaagaaagaattattattggtgcttacgatgaagaaatggtttcaatacatcagattgtc
gaaatggcatatttaaccaagcgaccaatcgtgacatatggtaaaacttatggccagcta
taccaattaatggctaaggaacatcctcaattaaaattacctgaattaattgactataaa
tatgctaatcgcactgaaaatgcagtaattttggtaacaggttcaattgagcgcctatat
tcgcggttcttacgaattacagatggcaatgatgtatatttaaagttaaaaaacactgat
aatgtaattatgatagcgcctcctattgacggtttggaaagtttagcggccattgccctt
gatgaaattgcgcgtataacaccaaaaatttccgacgtttcaaacaaggaattttataga
caccgtcctgcccgtcaagacctaattgatttagtgaaaaaaattaatccacaatatgtt
atccctgcacaaggtttatatcgttatcttgccgaagctactaaatacataagtcaagac
gctggcataagaactcaaaattgtttattgctacaaaatggtaaaattgctcactttatt
aacggaaaattagcaagtacaaaaggcaaagttaagaatgttggtgatgttattattgat
ggctttggaattggtgatataagtactgaagttattgctgaaagagaaatgttggggcgc
gacggagcaatcatcattacatcaacgtatagtccaattactaaaaaaattgttggtaaa
gtgcaaattaatattatcggttctctttcgaaggaagataaaaaacaagctgaggaatta
attgtaacaactatggcatctatcatggatactgaaacatttgaaggactaaaagacttt
caaaaccgtgcacgaacagtcattcgcaagaaaatatttaagacttttaataaagaacca
atgattattgtttccttgaatcaagttcaaaactaa

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