Micromonospora craniellae: ID554_10635
Help
Entry
ID554_10635 CDS
T06957
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mcra
Micromonospora craniellae
Pathway
mcra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ID554_10635 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcra03400
]
ID554_10635 (ligD)
Enzymes [BR:
mcra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ID554_10635 (ligD)
DNA repair and recombination proteins [BR:
mcra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ID554_10635 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QOC94023
LinkDB
All DBs
Position
complement(2399292..2400233)
Genome browser
AA seq
313 aa
AA seq
DB search
MPGAPLKPMLAVTRQLPAGAGWAYEFKWDGVRALADIAAGRQHLYARSGVEITTAYPELI
PLGEQVDDALLDGEVVLFDRAGRPSFTALAERMHVRDPVKAARLAATVPVTYMIFDLLRL
RGTDLTGWPYTRRREALDALGLGAARWTVPPVFTDGPATYDVAGEHGLEGVVAKRADSTY
RPGVRSPDWVKVKLEVTGDFVIGGWRPGARRIGGLLVGVPGAGGRLVYRGRVGGGIGTAL
ERELLRELEPLRTIASPFGGDVPREDARGAIWVTPQVVVEVKYGQRTPDGRLRFPRVLRL
RPDKSAEEVDDAN
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcgcgccactgaagccgatgctcgcggtgacccggcaactccccgccggcgcc
gggtgggcgtacgagttcaagtgggacggcgtacgcgcactggccgacatcgccgccgga
cggcagcacctctacgcgcgctccggtgtggagatcaccaccgcctaccccgagctgatt
ccgctcggtgaacaggtcgacgacgcgctgctcgacggtgaggtggtcctcttcgaccgg
gccggtcgaccctcgttcaccgctctggccgagcggatgcacgtacgggacccggtcaag
gcggcccggctggcggcgaccgtgccggtcacgtacatgatcttcgacctgttgcggctg
cgcggcacggacctcaccggctggccgtacacccggcgtcgggaagccctggacgcgctg
gggctgggggcggcgcggtggacggtgccaccggtcttcaccgatggcccggccacctac
gacgtcgccggtgagcacggcctggaaggggtggtggccaagcgggcggactcgacctac
cggcccggcgtgcgctcgccggactgggtcaaggtcaagctggaggtgaccggcgacttc
gtgatcggcggctggcgccccggtgcccgccggatcggtggcctgctggtcggggtgccc
ggcgccggtggacggctggtctaccgagggcgggtcggtggcggcatcggaacggccctg
gaacgcgagctgctgcgcgaactggagccgctgcggaccatcgcctctccgttcggcggc
gacgtgccacgggaggatgcccggggcgcgatctgggtgaccccccaggtggtggtggag
gtcaagtacggccagcgcacgccggacgggcgactgcggttcccccgagtcctgcgactg
cggccggacaagtcggccgaggaggtggacgatgccaactga
DBGET
integrated database retrieval system
