Micromonospora craniellae: ID554_18985
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Entry
ID554_18985 CDS
T06957
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcra
Micromonospora craniellae
Pathway
mcra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ID554_18985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcra03021
]
ID554_18985
03400 DNA repair and recombination proteins [BR:
mcra03400
]
ID554_18985
Enzymes [BR:
mcra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ID554_18985
Transcription machinery [BR:
mcra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ID554_18985
DNA repair and recombination proteins [BR:
mcra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ID554_18985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QOC95143
LinkDB
All DBs
Position
4199293..4203180
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAEARHRDLSTIENEILAEKRQSENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLDSKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLAAEAENLRETIRTGKGQRKIRALKRLKVVA
AFQNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTTGERGEGR
AFSSDAEARMAYDNGELHLQAPVKIRLRNVVEVDNGTGGQPWTAPEGWVQGEPLTVETTL
GRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTTEERRGELIEIWTKATNEVAKE
MDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQVGQHLDGR
LVVHEHAETSVHARTLADDIKGPDGTVVAERGADINSILVDKIVAAGVDGVRVRSVLTCE
SKLGVCGACYGRSLPTGKIVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARIPKGKAPIADTPGRIRIEDGERSRKIVVIPDDGSDEIVYDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVGEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgagttgcgaattgggctggcgaccgccgacgacatc
cgtcagtggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctcgaaggtccgccgtgagcggatgggccatatcgagctcgccgcgccg
gtgacccacatctggtatttcaagggcgtgccgagccggctgggttacctgctggacctc
gcccccaaggaccttgagaagatcatctacttcgcctcgtacgtcgtgacgagcgttgac
gccgaggcgcgtcaccgtgacctctcgaccatcgagaacgagatcctggccgagaagcgg
cagtcggagaacagccgcgactcggagatcgagaagcgggccgccaagctcgaggccgac
ctggccgagctggaggccgagggtgcgaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgcctggac
gaggtgctggacaccttccgcaagctcgactcgaagcagctggtcaccgacgagctgctc
taccgcgagctccgcgaccggttcggcgagtacttcaccgggggtatgggcgccgaggcg
atcaaggccctggtgcagaacatggacctcgccgccgaggcggagaacctgcgggagacc
atccgcaccggtaagggccagcggaagatccgggcgctcaagcggctcaaggtcgtcgcg
gcgttccagaacacccgcaactcgccgctcggcatggtgctggactgcgtaccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggccggccggtcaccggcccgggtaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgaagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcga
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggtgctgctcaaccgg
gcgcccaccctgcaccgactcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgcgttcaacgccgacttcgacggcgaccag
atggcggtgcacgtgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcgggctctaccacctgacccacctcaccaccggtgagcgcggggagggccgg
gcgttcagctcggacgccgaggcgcggatggcgtacgacaacggcgagctgcacctgcag
gcgccggtcaagatccggctgcggaacgtggtcgaggtggacaacggcaccggtgggcag
ccgtggaccgcgcccgagggctgggtccagggtgagccgttgaccgtggagaccacgctc
ggccgagtgctgttcaacgagaccctgccgcagggctaccggttcgtgaactacgagatc
cgcaagggtcagctctccgcgatcgtcaacgatctcgccgagcggttcccgaaggtggcc
ctggcggccaccctggatgggctcaaggaggccggtttccactgggccacctggtccggc
gtgaccatcggcatggaggacgtcatcgctccgccgcgcaagcgggagatcctggagcgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctgatgaccaccgag
gagcgtcgcggcgagctcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggacaccgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgctcgc
ggcaacctgctccagctccggcagatcgcggcgatccgtggtctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggccagctaccgggagggtctgtccgtgctggag
tacttcatctccacgcacggtgcccgtaagggtctcgcggacaccgccctgcgtaccgcc
gactcgggttacctgacccggcgtctggtggacgtctcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgggccatcccgatgcaggtcggtcagcacctcgacggccgg
ctcgtggtgcacgagcacgccgagacgagcgtgcacgcccgtaccctcgccgacgacatc
aaggggccggacggcaccgtcgtcgccgagcgcggcgcggacatcaactcgatcctggtc
gacaagatcgtcgccgccggggtcgacggcgtccgggtgcgcagcgtgctcacctgcgag
tcgaagctgggcgtctgcggtgcgtgctacggccgctcgctgccgaccggcaagatcgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggtacgcag
ctgacgatgcggaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccgcgtgtccaggagatcttcgaggcccggatcccgaagggcaaggcgccgatcgccgac
acccccggccggatccggatcgaggacggcgagcggtcgcgcaagatcgtcgtgatcccc
gacgatggcagcgacgagatcgtgtacgacaagatctcgaagcgggtccggctgcgggcg
cacgacggcgaccacgtcgaggtcggcgagaagctcaccgagggcaccatcgacccgcac
gagttgctgcgcatcctcggcccgcgcgcggtccaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtcatcgactccggctcgaccgagttcctgccgggtgtg
ctggtcgaccgggcgctgttcgagtcggaaaaccgccggctcgtcggcgagggcggcgag
cccgcagccggacgtccggtgctgatgggtatcaccaaggcctcgctggccaccgactcc
tggctctcggcggcctccttccaggagaccacccgggtgctgaccgatgcggcgatccac
gcccgcagcgactcgctcatcggtctcaaggagaacgtgatcatcggtaagctcatcccg
gccggtaccggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaagaggcgaag
gccaaggtctactcgatgaccgggtacccggagaccgactacggcttcgggccggccagt
ggccaggcggttccgctggacgacttcgacttcgggtcgtaccgctag
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