Mycolicibacterium crocinum: MI149_20440
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Entry
MI149_20440 CDS
T08227
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcro
Mycolicibacterium crocinum
Pathway
mcro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MI149_20440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcro03019
]
MI149_20440
03009 Ribosome biogenesis [BR:
mcro03009
]
MI149_20440
Enzymes [BR:
mcro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MI149_20440
Messenger RNA biogenesis [BR:
mcro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MI149_20440
Ribosome biogenesis [BR:
mcro03009
]
Prokaryotic type
rRNA processing factors
MI149_20440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
BUD22
EAD1
Motif
Other DBs
NCBI-ProteinID:
ULN44456
LinkDB
All DBs
Position
complement(4172756..4175587)
Genome browser
AA seq
943 aa
AA seq
DB search
MPERLRVHSLARVLGTTSRRVLDALSELDGRTRSPHSSVDRTDAVRVRDVLAASPEVSAE
EPVEAAAVVAEDTTAAEPESTDAAETPETAEEPESRLILETTTTVETVEQSAFMPLFVAP
QPVEAEPKHRKVEDDDEAEDDDEDDEDESGGDTDSDQSERPANRRRRRGRRGRGRGRGEQ
GGPEGEGGDDAERTEGDETAESGDASDSDDDDSDDESSTGEGATRRRRRRRRRKTGGGDD
SESGSADDPPNTVVHERAPRKEKERDSNEIQGISGSTRLEAKRQRRRDGRDAGRRRPPIL
SEAEFLARREAVERVMVVRDKIRTEPPHEGARYTQIAVMEDGVVVEHFVTSAASASLVGN
IYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGAQRKIEQALKPGDYVVVQ
VSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILRDVVPDDAG
VIIRTASEGVKEEDIRGDVERLQERWTKIAEEAERVKGNKAGAAVALYEEPDVLVKVIRD
LFNEDFSGLIVSGDDAWQTINDYVNSVAPDLVSKLTKYEPAGGPDGPDVFAVHRIDEQLA
KALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLR
LRDIGGIVVIDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQLTRKRLGTG
LVEAFSTTCTHCAGRGIVLHADPVDTAQAAGRKSESGSGGGGGRRGKRGKRGRTETDEAP
VAKVPQHTSEHPMFKAMAAANGKHEDDEAEEELADELERETDGEESEEALETVEEAAEDV
AEEDLDDDSDDEDSDDDEDDEIDVDLDEDDEDLDEDNLDVDDDEDDADSDDDDDDLDDDL
DDEDDADSDEYDDDQPVVAPEPAVPERRPRRRAAARPAGPPTS
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgaacgcttgagggtgcattcgctggcacgggtgctcggtaccaccagccggcgc
gtgctggacgccctcagcgagctcgacggccgcacccgaagcccgcactccagcgtggac
cgcaccgacgcggtgcgggtgcgcgacgtcctggcggccagccccgaggtcagcgccgaa
gagcccgtcgaggccgctgccgtggtggccgaggacaccacagctgccgagcctgagtcg
accgatgccgccgagacgcccgagactgccgaggagccggagtcgcggctgatcctggaa
accaccaccactgtcgagaccgtcgagcagtcggccttcatgccgctgttcgtcgcgcct
cagcccgtcgaagccgagcccaagcaccgcaaggtcgaggacgatgacgaggccgaagac
gacgacgaggacgacgaggacgaatccggcggcgatacggacagtgatcagtccgaacgt
cccgccaaccggcggcgacgccgtggccgccgtggccgcggccgcggtcgcggtgagcag
ggcggtccggagggtgagggcggagacgacgccgagcggaccgagggcgacgaaaccgcc
gagtccggtgacgcatccgacagcgatgacgacgacagcgacgacgagtcgagcaccggt
gagggtgcgacccgccggcgccgcagacggcggcgccgcaagaccggtggcggcgacgac
tccgagagcggctcggccgacgatccgccgaacaccgtcgtccacgagcgcgccccgcgc
aaggaaaaggaacgcgactccaacgaaattcaaggcatcagcggctccacccgcctggag
gccaagcgtcagcgccgccgcgacggtcgcgatgccggccgccggcgcccgccgatcctg
tccgaggccgaattcctggctcgccgcgaggccgtcgaacgcgtgatggtggtgcgcgac
aagatccgcaccgaaccaccgcatgaaggggctcgctacacccagatcgccgtcatggaa
gacggtgtcgtcgtcgagcactttgtgacgtcggcggcgtcggcttcgctggtcggcaac
atctatctcggcatcgttcagaacgtgctgccctcgatggaggcggcgttcgtcgacatc
ggccgcggccgcaacggtgtgctctacgccggcgaggtcaactgggaagccgccggactc
ggcggcgcgcagcgcaagatcgaacaggccctcaagcccggcgactacgtcgtcgtccag
gtcagcaaggacccggtcggccacaagggtgcgcggctgaccacccaggtgtcgctggcc
gggcgctacctcgtctacgtgccgggtgcatcgtcgaccgggatcagccgcaagctgccc
gacaccgaacgccagcggctcaaggaaatcctgcgcgacgtggtgcccgacgatgccggc
gtgatcatccggaccgcctcggaaggcgtcaaggaagaagacatccgcggcgacgtcgaa
cgcctccaggaacgctggaccaagatcgccgaggaagccgagcgggtcaagggcaacaag
gccggcgccgccgtcgcgctgtacgaagagcccgacgtgctggtcaaggtgatccgcgat
ctgttcaacgaagacttctccgggctgatcgtctccggcgacgacgcctggcagaccatc
aatgactacgtcaattccgttgcgccggaccttgtttcgaagctgacgaagtacgagccg
gcgggtgggcctgatggcccggatgtgttcgccgtgcaccgcatcgacgagcagctggcc
aaggcgttggaccgcaaggtgtggctgccctcgggcggcacgctggtgatcgaccgcact
gaggcgatgacggtcgtcgacgtcaacaccggcaagttcaccggtgcgggcggcaacctc
gagcagacggtcaccaagaacaacctcgaggcggccgaggagatcgtgcgccagctgcgg
ctgcgcgatatcggcggcatcgtggtcatcgacttcatcgacatggtgctggagtccaac
cgtgacctcgtgctgcggcggctgaccgaggcgctgggccgcgaccgtacccgccatcag
gtgtcggaggtgacctcgctcggcctggtccagctgacccgcaagcggctgggcaccggg
cttgtcgaggcgttctccaccacctgtacgcactgcgccgggcggggcatcgtgctgcac
gccgacccggtcgacacggcccaggccgccgggcgcaagtccgagtcggggagcggcggc
ggtggtggccgacgcggcaagcgtggcaagcgcggccgtaccgagaccgacgaagcgccg
gtggcgaaggttccgcagcacaccagtgagcacccgatgttcaaggcgatggcggcggcc
aacggcaagcacgaggacgacgaggccgaagaggagctcgctgacgagctcgagcgggag
accgacggcgaggagtccgaagaggctctcgagaccgtcgaggaggccgccgaggatgtt
gccgaggaagacctggacgacgactctgacgacgaggattccgacgacgacgaggacgac
gaaatcgacgtcgacctcgacgaagacgacgaggacctcgacgaggacaacctcgacgtc
gatgacgacgaggacgacgccgactccgacgacgatgacgacgacctcgacgacgacctc
gacgacgaggacgacgccgactccgacgaatacgacgatgaccagccggtcgtggcgccg
gagccggcggtgccggaacggcgtccgcggcgccgggcggcggctcgaccagcggggccg
ccgacgtcctag
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